miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 5' -58.9 NC_005337.1 + 85099 0.66 0.795394
Target:  5'- aCCGCACGAgCGUCUgCac-GUUCUUg -3'
miRNA:   3'- aGGCGUGCUgGCGGAgGgcuCAAGAG- -5'
25503 5' -58.9 NC_005337.1 + 103708 0.66 0.795394
Target:  5'- -gCGCACGGCCuccacggggaGCUcCCCGAGUccgUCUa -3'
miRNA:   3'- agGCGUGCUGG----------CGGaGGGCUCA---AGAg -5'
25503 5' -58.9 NC_005337.1 + 4107 0.66 0.795394
Target:  5'- cUCCGCGCGcACgGCCUCCgaaagcgcgCGAGcgC-Ca -3'
miRNA:   3'- -AGGCGUGC-UGgCGGAGG---------GCUCaaGaG- -5'
25503 5' -58.9 NC_005337.1 + 127220 0.66 0.794504
Target:  5'- -aCGCGCGcaaccccGCCGCCcgcCCCGAcGUgCUCg -3'
miRNA:   3'- agGCGUGC-------UGGCGGa--GGGCU-CAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 68421 0.66 0.786436
Target:  5'- -gCGCGCG-CCGCCgacgaCGAGUccgcUCUCg -3'
miRNA:   3'- agGCGUGCuGGCGGagg--GCUCA----AGAG- -5'
25503 5' -58.9 NC_005337.1 + 45504 0.66 0.786436
Target:  5'- -aCGCGCGGaccugCGCCUC-CGGGUcCUCg -3'
miRNA:   3'- agGCGUGCUg----GCGGAGgGCUCAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 36483 0.66 0.786436
Target:  5'- gCCGCACGGCCuugGCCgcggCCgCG-GcgCUCg -3'
miRNA:   3'- aGGCGUGCUGG---CGGa---GG-GCuCaaGAG- -5'
25503 5' -58.9 NC_005337.1 + 43841 0.66 0.786436
Target:  5'- cUCCGCGCa--CGaCCUCCUGcAGUUCa- -3'
miRNA:   3'- -AGGCGUGcugGC-GGAGGGC-UCAAGag -5'
25503 5' -58.9 NC_005337.1 + 14421 0.66 0.786436
Target:  5'- gCCGCGCGacguGCCGCCgcuggCgCCGGGUa--- -3'
miRNA:   3'- aGGCGUGC----UGGCGGa----G-GGCUCAagag -5'
25503 5' -58.9 NC_005337.1 + 120413 0.66 0.786436
Target:  5'- gCC-CACGACCGUC-CCgGAGgcggagCUCa -3'
miRNA:   3'- aGGcGUGCUGGCGGaGGgCUCaa----GAG- -5'
25503 5' -58.9 NC_005337.1 + 24903 0.66 0.786436
Target:  5'- cCCGCGCGugcCCGCCU-CCGuGUaCUg -3'
miRNA:   3'- aGGCGUGCu--GGCGGAgGGCuCAaGAg -5'
25503 5' -58.9 NC_005337.1 + 89352 0.66 0.786436
Target:  5'- aUCCGCGCGGacaCGUgUCCaCGA--UCUCc -3'
miRNA:   3'- -AGGCGUGCUg--GCGgAGG-GCUcaAGAG- -5'
25503 5' -58.9 NC_005337.1 + 68210 0.66 0.785533
Target:  5'- gCCGCuGCGGgcCCGCCUgacggcgUCCGGGUUC-Cg -3'
miRNA:   3'- aGGCG-UGCU--GGCGGA-------GGGCUCAAGaG- -5'
25503 5' -58.9 NC_005337.1 + 77014 0.66 0.777345
Target:  5'- cCCGCGCGGCC-CCgugCCCGAa----- -3'
miRNA:   3'- aGGCGUGCUGGcGGa--GGGCUcaagag -5'
25503 5' -58.9 NC_005337.1 + 2657 0.66 0.768127
Target:  5'- -gCGC-CGGCCGCCUCCacgcuGAGUgcgCg -3'
miRNA:   3'- agGCGuGCUGGCGGAGGg----CUCAagaG- -5'
25503 5' -58.9 NC_005337.1 + 67680 0.66 0.768127
Target:  5'- cUCCGUcagccaccaGGCCGUCUCCUGGGcgucuaUCUCg -3'
miRNA:   3'- -AGGCGug-------CUGGCGGAGGGCUCa-----AGAG- -5'
25503 5' -58.9 NC_005337.1 + 67461 0.66 0.758793
Target:  5'- aUCCgGCGCagccGCCGCUUCgUCGAGggcgUCUCg -3'
miRNA:   3'- -AGG-CGUGc---UGGCGGAG-GGCUCa---AGAG- -5'
25503 5' -58.9 NC_005337.1 + 128653 0.66 0.758793
Target:  5'- cCUGCGCGGCCgGUCgugCaCCGAGacgCUCg -3'
miRNA:   3'- aGGCGUGCUGG-CGGa--G-GGCUCaa-GAG- -5'
25503 5' -58.9 NC_005337.1 + 33994 0.66 0.758793
Target:  5'- -gCGCACgGACCGCCUCuuGcgcgcgcgguaGGUgCUCc -3'
miRNA:   3'- agGCGUG-CUGGCGGAGggC-----------UCAaGAG- -5'
25503 5' -58.9 NC_005337.1 + 83009 0.66 0.749349
Target:  5'- gUCCGcCAUGGCCGCCUugacgCUCGAGa---- -3'
miRNA:   3'- -AGGC-GUGCUGGCGGA-----GGGCUCaagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.