miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 108838 0.65 0.82287
Target:  5'- uGCCGaaGCGCGCGGgcGAcacgccgucgugCGAGCGGa -3'
miRNA:   3'- gCGGUa-CGCGCGCCa-CUa-----------GUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 126212 0.66 0.816002
Target:  5'- aCGCCAcGCGCGaguGcGUGAUgGAGCuGGc -3'
miRNA:   3'- -GCGGUaCGCGCg--C-CACUAgUUCG-CCa -5'
25504 5' -57.9 NC_005337.1 + 42837 0.66 0.816002
Target:  5'- cCGCCcgcUGCGCGUGGUGGUgA--CGGn -3'
miRNA:   3'- -GCGGu--ACGCGCGCCACUAgUucGCCa -5'
25504 5' -57.9 NC_005337.1 + 83968 0.66 0.816002
Target:  5'- aCGUCAcgGCGUucacgccgGUGGUGGUCuccauGGCGGa -3'
miRNA:   3'- -GCGGUa-CGCG--------CGCCACUAGu----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 33089 0.66 0.816002
Target:  5'- uGcCCGUGauCGCGGcGAUCAcGCGGa -3'
miRNA:   3'- gC-GGUACgcGCGCCaCUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 116002 0.66 0.807267
Target:  5'- gCGCUggGCGUGCGGcucaccGAgCAGGUGGa -3'
miRNA:   3'- -GCGGuaCGCGCGCCa-----CUaGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 72469 0.66 0.807267
Target:  5'- cCGCCAUGCGCGUGGac-----GUGGa -3'
miRNA:   3'- -GCGGUACGCGCGCCacuaguuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 119777 0.66 0.807267
Target:  5'- aCG-CAUGUGgcCGCGcGUGGUCGGuGCGGUg -3'
miRNA:   3'- -GCgGUACGC--GCGC-CACUAGUU-CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 124782 0.66 0.807267
Target:  5'- gGCCAucgagcucUGCGCGCaGaUGggCcGGCGGUg -3'
miRNA:   3'- gCGGU--------ACGCGCGcC-ACuaGuUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 115338 0.66 0.807267
Target:  5'- aCGCCcgGCG-GCGGgcgGAUCugcgugcccGCGGa -3'
miRNA:   3'- -GCGGuaCGCgCGCCa--CUAGuu-------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 69283 0.66 0.807267
Target:  5'- cCGCCGcGCGCGaCGGgcaguUCGcGCGGg -3'
miRNA:   3'- -GCGGUaCGCGC-GCCacu--AGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 56646 0.66 0.806385
Target:  5'- aCGCUG-GCGCGCaaGGUGAUUAAGaagauggaggacaCGGUg -3'
miRNA:   3'- -GCGGUaCGCGCG--CCACUAGUUC-------------GCCA- -5'
25504 5' -57.9 NC_005337.1 + 117081 0.66 0.80195
Target:  5'- aCGCCAUguggcuaccGCGCGCccugcuggcgcugucGGUGAUau-GCGGa -3'
miRNA:   3'- -GCGGUA---------CGCGCG---------------CCACUAguuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 76397 0.66 0.798375
Target:  5'- -aCCGUGCGCGCGGgGcgCuGGCGc- -3'
miRNA:   3'- gcGGUACGCGCGCCaCuaGuUCGCca -5'
25504 5' -57.9 NC_005337.1 + 121695 0.66 0.798375
Target:  5'- gCGCCAacgugaacGCGCGCGGgGA---GGCGGa -3'
miRNA:   3'- -GCGGUa-------CGCGCGCCaCUaguUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 47956 0.66 0.798375
Target:  5'- aCGCCAUguucGCGCGCGaGUG--CGGcGCGGa -3'
miRNA:   3'- -GCGGUA----CGCGCGC-CACuaGUU-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 109017 0.66 0.789332
Target:  5'- uCGCggaaCGUGgGCGUGGaGAUCcuGCGGUc -3'
miRNA:   3'- -GCG----GUACgCGCGCCaCUAGuuCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 128308 0.66 0.789332
Target:  5'- gCGCCGUcugcucGCGCGCGGcg--CGAGCGcGa -3'
miRNA:   3'- -GCGGUA------CGCGCGCCacuaGUUCGC-Ca -5'
25504 5' -57.9 NC_005337.1 + 98881 0.66 0.789332
Target:  5'- gCGCCGcGCGCGCGGacUGcgcgcUCGAGCccGGg -3'
miRNA:   3'- -GCGGUaCGCGCGCC--ACu----AGUUCG--CCa -5'
25504 5' -57.9 NC_005337.1 + 128496 0.66 0.789332
Target:  5'- gGgCGUGCGuCGCGuacGUGGUCGcGCGGc -3'
miRNA:   3'- gCgGUACGC-GCGC---CACUAGUuCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.