miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 5' -55.6 NC_005337.1 + 74215 0.66 0.901751
Target:  5'- uCCGCCGUGcUUGcGGCGGaugaUCG-GGAGg -3'
miRNA:   3'- -GGCGGCACuAGU-CCGCCg---AGUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 74164 0.72 0.612428
Target:  5'- aCCGCCGUGcugCgggAGGCGcGCUCGggccgGGAGu -3'
miRNA:   3'- -GGCGGCACua-G---UCCGC-CGAGUa----UCUC- -5'
25508 5' -55.6 NC_005337.1 + 71670 0.67 0.866995
Target:  5'- aCGCgCG-GGUgCAcGGCGGCgaCAUAGAGg -3'
miRNA:   3'- gGCG-GCaCUA-GU-CCGCCGa-GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 66318 0.68 0.800676
Target:  5'- gCGCCGcGGUCGcgggcuGGCGacacguGCUCGUGGAGc -3'
miRNA:   3'- gGCGGCaCUAGU------CCGC------CGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 65826 0.67 0.874394
Target:  5'- gUGCCGUccuUgAGcGCGGCUCcgAGAGc -3'
miRNA:   3'- gGCGGCAcu-AgUC-CGCCGAGuaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 65150 0.66 0.901751
Target:  5'- gCCGCCGUGGaCc-GCGGCUCGc---- -3'
miRNA:   3'- -GGCGGCACUaGucCGCCGAGUaucuc -5'
25508 5' -55.6 NC_005337.1 + 64657 0.81 0.21389
Target:  5'- cUCGCCGUGG-CGGuGCGGCUCGUcGAGg -3'
miRNA:   3'- -GGCGGCACUaGUC-CGCCGAGUAuCUC- -5'
25508 5' -55.6 NC_005337.1 + 63621 0.66 0.901751
Target:  5'- aCGCCGuUGGUgaaGGGCaGCuugUCGUAGAGc -3'
miRNA:   3'- gGCGGC-ACUAg--UCCGcCG---AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 63305 0.66 0.90801
Target:  5'- cCCGCUcagcaccgaGUGcagCAGGCGcuuGCUCGUGGAc -3'
miRNA:   3'- -GGCGG---------CACua-GUCCGC---CGAGUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 59652 0.7 0.734459
Target:  5'- cCCGCCGggGAacaUCAcgucgucGCGGCUCcgGGAGg -3'
miRNA:   3'- -GGCGGCa-CU---AGUc------CGCCGAGuaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 59015 0.67 0.881573
Target:  5'- gCGCCGUGcgGUCGuGGCGcccGCUgGUGGAc -3'
miRNA:   3'- gGCGGCAC--UAGU-CCGC---CGAgUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 58222 0.66 0.914031
Target:  5'- aCCGCCGcg--C-GGCGG-UCAUGGAGc -3'
miRNA:   3'- -GGCGGCacuaGuCCGCCgAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 53650 0.69 0.776798
Target:  5'- gCGCCGUGAUCgccgcgaugcagcgcGucGGCGGCcgCAaGGAGg -3'
miRNA:   3'- gGCGGCACUAG---------------U--CCGCCGa-GUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 52008 0.7 0.703537
Target:  5'- aCGCCGUGA-CGGaCGGCcgcgcgcgcgcggUCAUGGAGu -3'
miRNA:   3'- gGCGGCACUaGUCcGCCG-------------AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 50438 0.66 0.901751
Target:  5'- uCCGCCcggGAuUCGGGCGGCgCGUGu-- -3'
miRNA:   3'- -GGCGGca-CU-AGUCCGCCGaGUAUcuc -5'
25508 5' -55.6 NC_005337.1 + 46126 0.69 0.791607
Target:  5'- gUCGUCcUGGUCGGGCGGCaccaGGAGa -3'
miRNA:   3'- -GGCGGcACUAGUCCGCCGaguaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 34897 0.72 0.612428
Target:  5'- gCGCCG--GUCAGGCGGUUgaCGUAGAu -3'
miRNA:   3'- gGCGGCacUAGUCCGCCGA--GUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 34427 0.68 0.800676
Target:  5'- aCCGCC-UGG-CGGGCGGCUUGUcGGc -3'
miRNA:   3'- -GGCGGcACUaGUCCGCCGAGUAuCUc -5'
25508 5' -55.6 NC_005337.1 + 29904 0.73 0.569486
Target:  5'- aCGCCGUGGUCAGGauGaccuccaugagCAUGGAGa -3'
miRNA:   3'- gGCGGCACUAGUCCgcCga---------GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 25060 0.66 0.919812
Target:  5'- gCGCCGUG--CGGGCGGCguUCGUcaAGc -3'
miRNA:   3'- gGCGGCACuaGUCCGCCG--AGUAucUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.