miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 99021 0.66 0.798896
Target:  5'- cGCGCGgcCUGCGagGCGCuggacGCCagguaCGCCGa -3'
miRNA:   3'- -CGUGCa-GAUGCg-CGCGu----UGGg----GCGGC- -5'
25511 5' -59 NC_005337.1 + 86184 0.66 0.798896
Target:  5'- aGCGCa--UGCGCGCGCGcuugaacuccggGCUCUGCaCGg -3'
miRNA:   3'- -CGUGcagAUGCGCGCGU------------UGGGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 95503 0.66 0.798896
Target:  5'- gGCGCGUCggGCuccacCGCGCAccGgCUCGCCa -3'
miRNA:   3'- -CGUGCAGa-UGc----GCGCGU--UgGGGCGGc -5'
25511 5' -59 NC_005337.1 + 131039 0.66 0.798896
Target:  5'- -gGCGU--GCGCGCGCcuCCUgGCCc -3'
miRNA:   3'- cgUGCAgaUGCGCGCGuuGGGgCGGc -5'
25511 5' -59 NC_005337.1 + 131341 0.66 0.798896
Target:  5'- uGCGCGcCgUGCGCGUcggcacuccgGCGACgCCGCUc -3'
miRNA:   3'- -CGUGCaG-AUGCGCG----------CGUUGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 66396 0.66 0.798896
Target:  5'- aGCACGcgCUGCGCcuCGaCAACCUCaCCGc -3'
miRNA:   3'- -CGUGCa-GAUGCGc-GC-GUUGGGGcGGC- -5'
25511 5' -59 NC_005337.1 + 68311 0.66 0.798896
Target:  5'- cGCGCGUgcccgaggagggCggcACGCGCGU-GCCCgUGCCGg -3'
miRNA:   3'- -CGUGCA------------Ga--UGCGCGCGuUGGG-GCGGC- -5'
25511 5' -59 NC_005337.1 + 55555 0.66 0.798896
Target:  5'- --uCGUCcacCGCGCGCG-CCUCGCuCGg -3'
miRNA:   3'- cguGCAGau-GCGCGCGUuGGGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 42470 0.66 0.798896
Target:  5'- -aGCGg-UACcCGCGCAccGCCgCCGCCGu -3'
miRNA:   3'- cgUGCagAUGcGCGCGU--UGG-GGCGGC- -5'
25511 5' -59 NC_005337.1 + 65715 0.66 0.798896
Target:  5'- cGCACG-CggugggGCGCGCcCGGCgCCGUCa -3'
miRNA:   3'- -CGUGCaGa-----UGCGCGcGUUGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 78779 0.66 0.798896
Target:  5'- cGCACGUCcAUGCGaGCGAUCaCGuCCGu -3'
miRNA:   3'- -CGUGCAGaUGCGCgCGUUGGgGC-GGC- -5'
25511 5' -59 NC_005337.1 + 11469 0.66 0.798896
Target:  5'- cGCACG-CUGCggucgauggccGCGCGCAGCaaCGCg- -3'
miRNA:   3'- -CGUGCaGAUG-----------CGCGCGUUGggGCGgc -5'
25511 5' -59 NC_005337.1 + 60960 0.66 0.798896
Target:  5'- cGCAUGgg-GCGCGCGCccaCgCGCUGg -3'
miRNA:   3'- -CGUGCagaUGCGCGCGuugGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 46664 0.66 0.798896
Target:  5'- uGCGCG-CgauCGCGCaGCAgucGCCCgagcggCGCCGg -3'
miRNA:   3'- -CGUGCaGau-GCGCG-CGU---UGGG------GCGGC- -5'
25511 5' -59 NC_005337.1 + 5675 0.66 0.798896
Target:  5'- -gGCGUCUaucACGCcCGC-GCCCaCGUCGa -3'
miRNA:   3'- cgUGCAGA---UGCGcGCGuUGGG-GCGGC- -5'
25511 5' -59 NC_005337.1 + 100105 0.66 0.798017
Target:  5'- aGCGCGUgcacCGCGaCGUGAccgccuuCCCCGCCa -3'
miRNA:   3'- -CGUGCAgau-GCGC-GCGUU-------GGGGCGGc -5'
25511 5' -59 NC_005337.1 + 91736 0.66 0.797137
Target:  5'- cGCACGUagcccccggccACGCGCGCGugcGCCUCgaaGCUGg -3'
miRNA:   3'- -CGUGCAga---------UGCGCGCGU---UGGGG---CGGC- -5'
25511 5' -59 NC_005337.1 + 34659 0.66 0.796255
Target:  5'- cGCACG-CgcacgACGUagccguugcucacgGCGCAGUCCCGCCc -3'
miRNA:   3'- -CGUGCaGa----UGCG--------------CGCGUUGGGGCGGc -5'
25511 5' -59 NC_005337.1 + 59268 0.66 0.793602
Target:  5'- uGCGCGUCaGCgGCGgcCGCcucguguacguggucGACCCgGCCGc -3'
miRNA:   3'- -CGUGCAGaUG-CGC--GCG---------------UUGGGgCGGC- -5'
25511 5' -59 NC_005337.1 + 69216 0.66 0.793602
Target:  5'- cGCACGgacuuccagaacgUGCGCGCGCG-CCUggacgUGCCGg -3'
miRNA:   3'- -CGUGCag-----------AUGCGCGCGUuGGG-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.