miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 126976 1.07 0.003059
Target:  5'- uACACGCCACUGCACUGCUACGUCCAGc -3'
miRNA:   3'- -UGUGCGGUGACGUGACGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 45947 0.69 0.742151
Target:  5'- cGCGCGCCg--GCGC-GCgugGCGUCCAc -3'
miRNA:   3'- -UGUGCGGugaCGUGaCGa--UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 100283 0.68 0.761745
Target:  5'- -gACGCCGCUggagacGCGCauccuggGCUGCGUCCc- -3'
miRNA:   3'- ugUGCGGUGA------CGUGa------CGAUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 93746 0.66 0.88855
Target:  5'- cGCGCGCCGCgGCGgCUGC-AUG-CCGc -3'
miRNA:   3'- -UGUGCGGUGaCGU-GACGaUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 132514 0.72 0.556852
Target:  5'- aACACGCUGCUGCA--GCccuuCGUCCGGg -3'
miRNA:   3'- -UGUGCGGUGACGUgaCGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 120967 0.72 0.567098
Target:  5'- cCACGgguaCCACcgGCACUGCUugGgUCCGGc -3'
miRNA:   3'- uGUGC----GGUGa-CGUGACGAugC-AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 130682 0.7 0.650159
Target:  5'- cUACGCCGCUggggGCGCUGCUcaagucccCGUCCGc -3'
miRNA:   3'- uGUGCGGUGA----CGUGACGAu-------GCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 5059 0.7 0.660562
Target:  5'- uCGCGCCACaGCAgcgcuCUGggGCGUCCAc -3'
miRNA:   3'- uGUGCGGUGaCGU-----GACgaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 53855 0.69 0.698775
Target:  5'- uGCGCGCCGCggacgGCucCUGCUgguucugcaagcagGCGUCgGGg -3'
miRNA:   3'- -UGUGCGGUGa----CGu-GACGA--------------UGCAGgUC- -5'
25512 5' -55.8 NC_005337.1 + 126867 0.69 0.742151
Target:  5'- -gACGCCGCUGCACcuCUGCGUgCu- -3'
miRNA:   3'- ugUGCGGUGACGUGacGAUGCAgGuc -5'
25512 5' -55.8 NC_005337.1 + 77840 0.69 0.701845
Target:  5'- cGCGCGuCCAC-GCGCUGCUGCccguagguGcCCAGc -3'
miRNA:   3'- -UGUGC-GGUGaCGUGACGAUG--------CaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 127411 0.7 0.690564
Target:  5'- cGCACGCUGCUGCACcaccuggcgaccgUGCcGCGggCCAa -3'
miRNA:   3'- -UGUGCGGUGACGUG-------------ACGaUGCa-GGUc -5'
25512 5' -55.8 NC_005337.1 + 6254 0.75 0.369827
Target:  5'- -aGCGUCGCUGaCGCUgGCgccgGCGUCCAGg -3'
miRNA:   3'- ugUGCGGUGAC-GUGA-CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 83052 0.69 0.712037
Target:  5'- aGCAUGCUGCUGgGCgugUGC-ACGUCCAc -3'
miRNA:   3'- -UGUGCGGUGACgUG---ACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 10639 0.72 0.526464
Target:  5'- uCGCGCCGCUGCAgaGCUccacgaGCGUCa-- -3'
miRNA:   3'- uGUGCGGUGACGUgaCGA------UGCAGguc -5'
25512 5' -55.8 NC_005337.1 + 70362 0.7 0.660562
Target:  5'- -uGCGCCGCcGCACgugGUcGCGUCCGu -3'
miRNA:   3'- ugUGCGGUGaCGUGa--CGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 130890 0.69 0.722159
Target:  5'- aACACGCCGCUGCACcucaugGCcGCGcacaccUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGa-----CGaUGC------AGGuc -5'
25512 5' -55.8 NC_005337.1 + 50312 0.68 0.752003
Target:  5'- cGCGcCGCCGCUGCcCUGCgcggacCGcCCGGu -3'
miRNA:   3'- -UGU-GCGGUGACGuGACGau----GCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132472 0.72 0.556852
Target:  5'- aACACGCCGCUGCACUccaugGCcACGauuUCCu- -3'
miRNA:   3'- -UGUGCGGUGACGUGA-----CGaUGC---AGGuc -5'
25512 5' -55.8 NC_005337.1 + 128155 0.7 0.639741
Target:  5'- aGCAUGUCGCcGgGCUGCUGUGUCCGu -3'
miRNA:   3'- -UGUGCGGUGaCgUGACGAUGCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.