miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25514 3' -53.3 NC_005337.1 + 85065 0.66 0.972214
Target:  5'- aGGUCCUugUacaGCgUCC-GGugGUUGGCc -3'
miRNA:   3'- -CCAGGGugAg--UG-AGGaCUugUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131771 0.66 0.972214
Target:  5'- aGGUgCgGCa-GCUgCUGAGCcUCGGCg -3'
miRNA:   3'- -CCAgGgUGagUGAgGACUUGuAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 25418 0.66 0.970486
Target:  5'- gGGUUCCGCUCGCacgacggcgugucgCCcGcGCGcuUCGGCa -3'
miRNA:   3'- -CCAGGGUGAGUGa-------------GGaCuUGU--AGCCG- -5'
25514 3' -53.3 NC_005337.1 + 61020 0.66 0.970486
Target:  5'- cGGUCCgAguacgcCUCcaccagguaguugcgGCUCCUGGugGUcCGGCc -3'
miRNA:   3'- -CCAGGgU------GAG---------------UGAGGACUugUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 60849 0.66 0.969292
Target:  5'- cGUgUCGCUCAugauCUCCUGGaacuccgacgcGCGUcCGGCg -3'
miRNA:   3'- cCAgGGUGAGU----GAGGACU-----------UGUA-GCCG- -5'
25514 3' -53.3 NC_005337.1 + 53902 0.66 0.969292
Target:  5'- cGGcCCCGCUgGCgguggagaCgCUGGACGgugCGGCc -3'
miRNA:   3'- -CCaGGGUGAgUGa-------G-GACUUGUa--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 41837 0.66 0.969292
Target:  5'- uGUCCgGCUC-CUCCU---CGUCGGg -3'
miRNA:   3'- cCAGGgUGAGuGAGGAcuuGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 114713 0.66 0.968375
Target:  5'- uGGUCUCGCgCGC-CCUGAuuaaggagugucugACGUUGGa -3'
miRNA:   3'- -CCAGGGUGaGUGaGGACU--------------UGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 7262 0.66 0.966159
Target:  5'- uGGUCuCCACgacgCGCagCUGGACguaGUCGuGCu -3'
miRNA:   3'- -CCAG-GGUGa---GUGagGACUUG---UAGC-CG- -5'
25514 3' -53.3 NC_005337.1 + 111388 0.66 0.966159
Target:  5'- cGGUgCCGCUCGCgcg-GcACGUCGGa -3'
miRNA:   3'- -CCAgGGUGAGUGaggaCuUGUAGCCg -5'
25514 3' -53.3 NC_005337.1 + 88388 0.66 0.966159
Target:  5'- cGUCCCACgcgCAgUCCgaguACAU-GGCg -3'
miRNA:   3'- cCAGGGUGa--GUgAGGacu-UGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 132076 0.66 0.962806
Target:  5'- cGGgccgcgCCCGCgucCGCcgCCUGcgccgugcGCGUCGGCg -3'
miRNA:   3'- -CCa-----GGGUGa--GUGa-GGACu-------UGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 36649 0.66 0.959228
Target:  5'- -cUCCCACUCG-UCCcgGAAgGUgcCGGCg -3'
miRNA:   3'- ccAGGGUGAGUgAGGa-CUUgUA--GCCG- -5'
25514 3' -53.3 NC_005337.1 + 131362 0.66 0.959228
Target:  5'- -cUCCgGCgacgcCGCUCCUGGACGU-GGUc -3'
miRNA:   3'- ccAGGgUGa----GUGAGGACUUGUAgCCG- -5'
25514 3' -53.3 NC_005337.1 + 127995 0.66 0.959228
Target:  5'- uGGaaCUGCUgcggcUGCUCCUGGACGcCGGCg -3'
miRNA:   3'- -CCagGGUGA-----GUGAGGACUUGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 131331 0.66 0.955421
Target:  5'- --aCCgCGCUCAUgcgcgCCgUGcGCGUCGGCa -3'
miRNA:   3'- ccaGG-GUGAGUGa----GG-ACuUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 89515 0.66 0.955421
Target:  5'- uGGUUCCAgUacaGCUCCccGAUGUUGGCg -3'
miRNA:   3'- -CCAGGGUgAg--UGAGGacUUGUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 21925 0.66 0.954632
Target:  5'- aGGUggCCGCgCGCUCCgccgagcucgcgGAGuCAUCGGCg -3'
miRNA:   3'- -CCAg-GGUGaGUGAGGa-----------CUU-GUAGCCG- -5'
25514 3' -53.3 NC_005337.1 + 56707 0.67 0.95138
Target:  5'- uGGUCagCgGCUCcguGCUCCUGAaguACG-CGGCc -3'
miRNA:   3'- -CCAG--GgUGAG---UGAGGACU---UGUaGCCG- -5'
25514 3' -53.3 NC_005337.1 + 43251 0.67 0.9471
Target:  5'- aGGUCgaACUCGCUCUcGAgcgccgccaGCAUcCGGCu -3'
miRNA:   3'- -CCAGggUGAGUGAGGaCU---------UGUA-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.