Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25514 | 3' | -53.3 | NC_005337.1 | + | 126255 | 1.14 | 0.002557 |
Target: 5'- aGGUCCCACUCACUCCUGAACAUCGGCc -3' miRNA: 3'- -CCAGGGUGAGUGAGGACUUGUAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 10600 | 0.72 | 0.715701 |
Target: 5'- cGGUCCCGC-CGCggggGAGCggCGGCg -3' miRNA: 3'- -CCAGGGUGaGUGaggaCUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 22848 | 0.71 | 0.793455 |
Target: 5'- --aCCCGCUCG-UgCUGGACcgCGGCg -3' miRNA: 3'- ccaGGGUGAGUgAgGACUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 115206 | 0.7 | 0.845736 |
Target: 5'- cGGUgCCGCUgcgggCGCUgCUGAAgAUgGGCg -3' miRNA: 3'- -CCAgGGUGA-----GUGAgGACUUgUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 123547 | 0.7 | 0.820391 |
Target: 5'- cGUCCCAC-CGC-CCUGAccACAU-GGCc -3' miRNA: 3'- cCAGGGUGaGUGaGGACU--UGUAgCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 94017 | 0.7 | 0.829027 |
Target: 5'- cGUCCUACUguCUCgUGGugGcgCGGCg -3' miRNA: 3'- cCAGGGUGAguGAGgACUugUa-GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 92663 | 0.7 | 0.823867 |
Target: 5'- aGGUgCUgcacugcuucgacguGCUCACcuUCCUGGGCggCGGCg -3' miRNA: 3'- -CCAgGG---------------UGAGUG--AGGACUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 103680 | 0.7 | 0.820391 |
Target: 5'- -cUCCCGCUCGCagcugcaaugccUCCUGGcGCA-CGGCc -3' miRNA: 3'- ccAGGGUGAGUG------------AGGACU-UGUaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 133381 | 0.69 | 0.883882 |
Target: 5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3' miRNA: 3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 86750 | 0.69 | 0.891524 |
Target: 5'- aGGUCCCGCUCcggcacgauggccauCUCCggcguccgcacGGGCggCGGCa -3' miRNA: 3'- -CCAGGGUGAGu--------------GAGGa----------CUUGuaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 56287 | 0.69 | 0.890841 |
Target: 5'- uGUCCaacCUCACgaaCCUGAACGUgCGGg -3' miRNA: 3'- cCAGGgu-GAGUGa--GGACUUGUA-GCCg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 133381 | 0.69 | 0.883882 |
Target: 5'- cGUCgCGCUCggGCUCCUGc---UCGGCg -3' miRNA: 3'- cCAGgGUGAG--UGAGGACuuguAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 57319 | 0.69 | 0.890841 |
Target: 5'- aGUCUCGCUCAcCUCCgcGGACAUCa-- -3' miRNA: 3'- cCAGGGUGAGU-GAGGa-CUUGUAGccg -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 56130 | 0.68 | 0.927546 |
Target: 5'- cGUCCCGacgcCUCGCUCgUGAACcgCcuGCa -3' miRNA: 3'- cCAGGGU----GAGUGAGgACUUGuaGc-CG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 15736 | 0.68 | 0.904048 |
Target: 5'- aGGUCCCACgug-UCCUGGcCGaUGGCa -3' miRNA: 3'- -CCAGGGUGagugAGGACUuGUaGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 105584 | 0.68 | 0.910291 |
Target: 5'- aGGaUCCCACUgGCUUCUGGGggaAggGGCu -3' miRNA: 3'- -CC-AGGGUGAgUGAGGACUUg--UagCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 75853 | 0.68 | 0.910291 |
Target: 5'- cGUCUCGC-CGCUCCggaaGAGCuucgUGGCg -3' miRNA: 3'- cCAGGGUGaGUGAGGa---CUUGua--GCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 83116 | 0.68 | 0.916289 |
Target: 5'- uGUUCCGCgcgUCGCUCUgcgUGGACuugagguaGUCGGCg -3' miRNA: 3'- cCAGGGUG---AGUGAGG---ACUUG--------UAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 96874 | 0.68 | 0.927546 |
Target: 5'- -cUCCgCGCggaugCGCggCgUGGACGUCGGCg -3' miRNA: 3'- ccAGG-GUGa----GUGa-GgACUUGUAGCCG- -5' |
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25514 | 3' | -53.3 | NC_005337.1 | + | 27617 | 0.68 | 0.927546 |
Target: 5'- -cUCCCGCcgcucgCGCUCCgGGAUcUUGGCg -3' miRNA: 3'- ccAGGGUGa-----GUGAGGaCUUGuAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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