Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25515 | 3' | -51.3 | NC_005337.1 | + | 4002 | 0.69 | 0.933309 |
Target: 5'- gGUCGcGCUGACGAgGACGUCccgcaGGCUCa -3' miRNA: 3'- gUAGUaUGACUGCUaCUGCGG-----CUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 124731 | 0.7 | 0.918993 |
Target: 5'- gCGUCGUGCUGAccuCGGUGACaucgagaccgccaaCCGGCUCa -3' miRNA: 3'- -GUAGUAUGACU---GCUACUGc-------------GGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 90144 | 0.71 | 0.897699 |
Target: 5'- gCGUCAUccgccgcacggACUcGACGccGACGCUGAUCCc -3' miRNA: 3'- -GUAGUA-----------UGA-CUGCuaCUGCGGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 54037 | 0.74 | 0.773064 |
Target: 5'- -----cGCUGGaGAUGuACGCCGACCCc -3' miRNA: 3'- guaguaUGACUgCUAC-UGCGGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 115223 | 0.68 | 0.969942 |
Target: 5'- ----cUGCUGAaGAUgGGCGCgGACCCc -3' miRNA: 3'- guaguAUGACUgCUA-CUGCGgCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 95903 | 0.69 | 0.947704 |
Target: 5'- -cUCGUGCUcGCGgcGACGgCGGCCg -3' miRNA: 3'- guAGUAUGAcUGCuaCUGCgGCUGGg -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 8731 | 0.7 | 0.916638 |
Target: 5'- aCGUCGUcCUuGGCGcgGAUGUCGGCgCCg -3' miRNA: 3'- -GUAGUAuGA-CUGCuaCUGCGGCUG-GG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 127362 | 0.74 | 0.73351 |
Target: 5'- gAUgAUGCUGcGCGccGGCGCgGACCCg -3' miRNA: 3'- gUAgUAUGAC-UGCuaCUGCGgCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 67842 | 0.69 | 0.947704 |
Target: 5'- uGUUGUugUGguaGAUGACGUCG-CCCg -3' miRNA: 3'- gUAGUAugACug-CUACUGCGGCuGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 6250 | 0.77 | 0.587403 |
Target: 5'- aGUCAgcgucGCUGACGcUGGCGCCGGCguCCa -3' miRNA: 3'- gUAGUa----UGACUGCuACUGCGGCUG--GG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 51843 | 0.7 | 0.916638 |
Target: 5'- cCAUCAUGuCcGACGAggagcaGAUGCUGGCCUc -3' miRNA: 3'- -GUAGUAU-GaCUGCUa-----CUGCGGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 19701 | 0.69 | 0.933309 |
Target: 5'- uCAUCGUguGCgGGCGggGGCGguaaguccugcuCCGGCCCg -3' miRNA: 3'- -GUAGUA--UGaCUGCuaCUGC------------GGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 79826 | 0.7 | 0.916638 |
Target: 5'- uCAUCugGCUGAUGAcacauccgUGGCGCUGAUCUc -3' miRNA: 3'- -GUAGuaUGACUGCU--------ACUGCGGCUGGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 61310 | 0.7 | 0.904261 |
Target: 5'- uCAUCuUGCUGgucACGAUGGCgaaggucuuggGCCGGCCg -3' miRNA: 3'- -GUAGuAUGAC---UGCUACUG-----------CGGCUGGg -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 86591 | 0.71 | 0.883842 |
Target: 5'- cCGUCGUACcGcACGcgGACGCCcGCCa -3' miRNA: 3'- -GUAGUAUGaC-UGCuaCUGCGGcUGGg -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 114556 | 0.73 | 0.801361 |
Target: 5'- cCAUCGUGgaGGCgcggccgcaGAUGGCGCCGGCgCu -3' miRNA: 3'- -GUAGUAUgaCUG---------CUACUGCGGCUGgG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 83411 | 0.67 | 0.984242 |
Target: 5'- ---gGUGCUGAaGAUGGCGCCcacgagcaucucgGugCCg -3' miRNA: 3'- guagUAUGACUgCUACUGCGG-------------CugGG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 75881 | 0.68 | 0.97396 |
Target: 5'- aCAUCAUGCaccgcugGACcagcgagcaccccgaGGUGuCGCCGGCCg -3' miRNA: 3'- -GUAGUAUGa------CUG---------------CUACuGCGGCUGGg -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 132254 | 0.68 | 0.96346 |
Target: 5'- ---uGUACU--CGAUGACGCCGAUggCCg -3' miRNA: 3'- guagUAUGAcuGCUACUGCGGCUG--GG- -5' |
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25515 | 3' | -51.3 | NC_005337.1 | + | 82633 | 0.69 | 0.947704 |
Target: 5'- -----cGCUGGCGAccgcgGAgCGCCGACCg -3' miRNA: 3'- guaguaUGACUGCUa----CU-GCGGCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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