miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 35120 0.67 0.893099
Target:  5'- gCGGC-GCGGACGCcCA--GUGCG-GCg -3'
miRNA:   3'- -GUCGaUGCCUGCGaGUagCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 89235 0.69 0.787438
Target:  5'- cCAGCuUGCGGAg---CAUCGUGCG-GCa -3'
miRNA:   3'- -GUCG-AUGCCUgcgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 31510 0.66 0.934444
Target:  5'- uCAGCacgUGGAUGCUCAcgGUGCagGUGCc -3'
miRNA:   3'- -GUCGau-GCCUGCGAGUagCACG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 10970 0.67 0.912284
Target:  5'- uGGCcgGCGGAucCGCgCAgcgCGUGCG-GCa -3'
miRNA:   3'- gUCGa-UGCCU--GCGaGUa--GCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 39549 0.67 0.879126
Target:  5'- cCGGCgccccgGCGGGCGCUCGgguacUCGUccuCGUGg -3'
miRNA:   3'- -GUCGa-----UGCCUGCGAGU-----AGCAc--GCACg -5'
25516 3' -54.6 NC_005337.1 + 118931 0.7 0.778067
Target:  5'- aAGCgucgcGCGGGCGCag--CGUGCGUcGCg -3'
miRNA:   3'- gUCGa----UGCCUGCGaguaGCACGCA-CG- -5'
25516 3' -54.6 NC_005337.1 + 53657 0.67 0.90613
Target:  5'- -cGCcACGcGCGCUUcgCG-GCGUGCu -3'
miRNA:   3'- guCGaUGCcUGCGAGuaGCaCGCACG- -5'
25516 3' -54.6 NC_005337.1 + 2483 0.7 0.749183
Target:  5'- gCGGCUAuguuCGGguACGCgcgCAgcagCGUGUGUGCg -3'
miRNA:   3'- -GUCGAU----GCC--UGCGa--GUa---GCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 130688 0.71 0.706184
Target:  5'- -cGCUGgGGGCGCugcucaaguccccgUCcgCGUGCGUGg -3'
miRNA:   3'- guCGAUgCCUGCG--------------AGuaGCACGCACg -5'
25516 3' -54.6 NC_005337.1 + 110500 0.68 0.856479
Target:  5'- cCAGCUcgACGuGGCGCUCGcgCGUG-GUGa -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUa-GCACgCACg -5'
25516 3' -54.6 NC_005337.1 + 132619 0.67 0.886229
Target:  5'- gCGGCgGCGGccaaGCUCGUCGccGCGgGCg -3'
miRNA:   3'- -GUCGaUGCCug--CGAGUAGCa-CGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 57295 0.67 0.899734
Target:  5'- gCGGCUGCGGcgcCGCUC-UCGgaaccGCGcgGCc -3'
miRNA:   3'- -GUCGAUGCCu--GCGAGuAGCa----CGCa-CG- -5'
25516 3' -54.6 NC_005337.1 + 24278 0.67 0.879126
Target:  5'- uCAGCUGgcCGG-CGCUCAcgcagggCGUG-GUGCu -3'
miRNA:   3'- -GUCGAU--GCCuGCGAGUa------GCACgCACG- -5'
25516 3' -54.6 NC_005337.1 + 25298 0.68 0.871797
Target:  5'- aCGGCggGCGGGcCGCgCGUCGaccggcGCGUGUa -3'
miRNA:   3'- -GUCGa-UGCCU-GCGaGUAGCa-----CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 74480 0.68 0.840325
Target:  5'- -cGCU--GGACGCguaCAUCGUGCGgGUa -3'
miRNA:   3'- guCGAugCCUGCGa--GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 29382 0.69 0.796665
Target:  5'- uCAGCUucgagcacCGGAUGCaCA-CGUGUGUGCc -3'
miRNA:   3'- -GUCGAu-------GCCUGCGaGUaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 117580 0.66 0.939369
Target:  5'- cCGGCaGCGGAgGC-CGcCGUGCGcgagaUGCu -3'
miRNA:   3'- -GUCGaUGCCUgCGaGUaGCACGC-----ACG- -5'
25516 3' -54.6 NC_005337.1 + 64413 0.66 0.934444
Target:  5'- cCAGCaGCGGcCGCUUggCGgccaccaGCGUGUc -3'
miRNA:   3'- -GUCGaUGCCuGCGAGuaGCa------CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 56112 0.66 0.929273
Target:  5'- -uGCU-CGaGGCGCacggCAUCGccaGCGUGCg -3'
miRNA:   3'- guCGAuGC-CUGCGa---GUAGCa--CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 89820 0.67 0.912284
Target:  5'- uCAGCUcgGCGaGGCGCUCGaCGUccuccgGCG-GCg -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUaGCA------CGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.