miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 3' -54.6 NC_005337.1 + 125252 1.1 0.002837
Target:  5'- uCAGCUACGGACGCUCAUCGUGCGUGCc -3'
miRNA:   3'- -GUCGAUGCCUGCGAGUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 25298 0.68 0.871797
Target:  5'- aCGGCggGCGGGcCGCgCGUCGaccggcGCGUGUa -3'
miRNA:   3'- -GUCGa-UGCCU-GCGaGUAGCa-----CGCACG- -5'
25516 3' -54.6 NC_005337.1 + 39549 0.67 0.879126
Target:  5'- cCGGCgccccgGCGGGCGCUCGgguacUCGUccuCGUGg -3'
miRNA:   3'- -GUCGa-----UGCCUGCGAGU-----AGCAc--GCACg -5'
25516 3' -54.6 NC_005337.1 + 131548 0.66 0.939369
Target:  5'- -cGCUaccgGCGGACG-UCGUCGcGCucGUGCu -3'
miRNA:   3'- guCGA----UGCCUGCgAGUAGCaCG--CACG- -5'
25516 3' -54.6 NC_005337.1 + 47670 0.71 0.678525
Target:  5'- -uGCUGCgaGGGCGCg-AUCGUGCGccUGCg -3'
miRNA:   3'- guCGAUG--CCUGCGagUAGCACGC--ACG- -5'
25516 3' -54.6 NC_005337.1 + 36027 0.71 0.699051
Target:  5'- aCGGCgacACGGACugcccgacguGCUCGUCGUGCcaGUcGCg -3'
miRNA:   3'- -GUCGa--UGCCUG----------CGAGUAGCACG--CA-CG- -5'
25516 3' -54.6 NC_005337.1 + 2483 0.7 0.749183
Target:  5'- gCGGCUAuguuCGGguACGCgcgCAgcagCGUGUGUGCg -3'
miRNA:   3'- -GUCGAU----GCC--UGCGa--GUa---GCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 118931 0.7 0.778067
Target:  5'- aAGCgucgcGCGGGCGCag--CGUGCGUcGCg -3'
miRNA:   3'- gUCGa----UGCCUGCGaguaGCACGCA-CG- -5'
25516 3' -54.6 NC_005337.1 + 118787 0.69 0.82339
Target:  5'- cCGGCgGCGG-CGC-CGUCGUGcCGcGCg -3'
miRNA:   3'- -GUCGaUGCCuGCGaGUAGCAC-GCaCG- -5'
25516 3' -54.6 NC_005337.1 + 110500 0.68 0.856479
Target:  5'- cCAGCUcgACGuGGCGCUCGcgCGUG-GUGa -3'
miRNA:   3'- -GUCGA--UGC-CUGCGAGUa-GCACgCACg -5'
25516 3' -54.6 NC_005337.1 + 74480 0.68 0.840325
Target:  5'- -cGCU--GGACGCguaCAUCGUGCGgGUa -3'
miRNA:   3'- guCGAugCCUGCGa--GUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 29382 0.69 0.796665
Target:  5'- uCAGCUucgagcacCGGAUGCaCA-CGUGUGUGCc -3'
miRNA:   3'- -GUCGAu-------GCCUGCGaGUaGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 110961 0.8 0.272556
Target:  5'- gCAGCUGCGcGGcCGCgucgaCGUCGUGCGUGUu -3'
miRNA:   3'- -GUCGAUGC-CU-GCGa----GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 71835 0.68 0.840325
Target:  5'- cCGGCaGCGG-CGCgUCAaCGUGUgGUGCa -3'
miRNA:   3'- -GUCGaUGCCuGCG-AGUaGCACG-CACG- -5'
25516 3' -54.6 NC_005337.1 + 88217 0.72 0.633956
Target:  5'- cCGGCcuccucgaggagGCGGGCuGCUgcgaagaCGUCGUGCGUGCc -3'
miRNA:   3'- -GUCGa-----------UGCCUG-CGA-------GUAGCACGCACG- -5'
25516 3' -54.6 NC_005337.1 + 89235 0.69 0.787438
Target:  5'- cCAGCuUGCGGAg---CAUCGUGCG-GCa -3'
miRNA:   3'- -GUCG-AUGCCUgcgaGUAGCACGCaCG- -5'
25516 3' -54.6 NC_005337.1 + 42508 0.68 0.848503
Target:  5'- aAGCUGCGGACGUcCAgcuUCGagGCGcacGCg -3'
miRNA:   3'- gUCGAUGCCUGCGaGU---AGCa-CGCa--CG- -5'
25516 3' -54.6 NC_005337.1 + 24278 0.67 0.879126
Target:  5'- uCAGCUGgcCGG-CGCUCAcgcagggCGUG-GUGCu -3'
miRNA:   3'- -GUCGAU--GCCuGCGAGUa------GCACgCACG- -5'
25516 3' -54.6 NC_005337.1 + 99904 0.72 0.657842
Target:  5'- uGGCUcgccGCGGcgGCGCUCcUCGUGC-UGCu -3'
miRNA:   3'- gUCGA----UGCC--UGCGAGuAGCACGcACG- -5'
25516 3' -54.6 NC_005337.1 + 130688 0.71 0.706184
Target:  5'- -cGCUGgGGGCGCugcucaaguccccgUCcgCGUGCGUGg -3'
miRNA:   3'- guCGAUgCCUGCG--------------AGuaGCACGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.