miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 125288 1.06 0.001101
Target:  5'- gAUGCAUGCCUAUGCGGCGCCCGCGGAu -3'
miRNA:   3'- -UACGUACGGAUACGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 25104 0.68 0.516467
Target:  5'- -cGCccGCgCggcGCGGCGCgCGCGGAc -3'
miRNA:   3'- uaCGuaCG-GauaCGCCGCGgGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 92513 0.67 0.525231
Target:  5'- gGUGCAagaGCCUGcGCGGcCGCCCcauggacGCGGu -3'
miRNA:   3'- -UACGUa--CGGAUaCGCC-GCGGG-------CGCCu -5'
25516 5' -60.9 NC_005337.1 + 56894 0.66 0.646753
Target:  5'- -cGCcgGCUgguguUGCGGCa-CCGCGGGa -3'
miRNA:   3'- uaCGuaCGGau---ACGCCGcgGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 103232 0.71 0.319504
Target:  5'- cUGCAaccUGCCgcugGUGC-GCGCCCGCGcGGu -3'
miRNA:   3'- uACGU---ACGGa---UACGcCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 738 0.71 0.319504
Target:  5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3'
miRNA:   3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 29163 0.7 0.373152
Target:  5'- -aGCA-GCCUAaaacGCGGCGCCgCGCGa- -3'
miRNA:   3'- uaCGUaCGGAUa---CGCCGCGG-GCGCcu -5'
25516 5' -60.9 NC_005337.1 + 38175 0.7 0.373152
Target:  5'- -cGCAUGuCCUccGCcGCGCCCGCGu- -3'
miRNA:   3'- uaCGUAC-GGAuaCGcCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 66072 0.7 0.40644
Target:  5'- -gGCggGCCcgcaGCGGCGCCCcCGGGg -3'
miRNA:   3'- uaCGuaCGGaua-CGCCGCGGGcGCCU- -5'
25516 5' -60.9 NC_005337.1 + 59712 0.68 0.497208
Target:  5'- -cGCGUGCCgc-GCGGCcagcaucacgcGCCgCGCGGc -3'
miRNA:   3'- uaCGUACGGauaCGCCG-----------CGG-GCGCCu -5'
25516 5' -60.9 NC_005337.1 + 85354 0.69 0.441533
Target:  5'- -cGCAguUGCCggacGCGGUGCCCGUGu- -3'
miRNA:   3'- uaCGU--ACGGaua-CGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 59990 0.7 0.405586
Target:  5'- uGUGCccccgugGUGCCaUAUGCGGCuauuuuucgGCgCGCGGAg -3'
miRNA:   3'- -UACG-------UACGG-AUACGCCG---------CGgGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 88254 0.75 0.189114
Target:  5'- cGUGCGUGCCggcgcgccgGCGG-GCgCCGCGGAg -3'
miRNA:   3'- -UACGUACGGaua------CGCCgCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 117808 0.69 0.441533
Target:  5'- -gGCAUGaacggcGUGGCGCCCGgGGAc -3'
miRNA:   3'- uaCGUACggaua-CGCCGCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 52461 0.72 0.305277
Target:  5'- cAUGUccGCgCUGagccGCGGCGCCCGCGaGAg -3'
miRNA:   3'- -UACGuaCG-GAUa---CGCCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 2837 0.7 0.389564
Target:  5'- -aGCGcgGCCUccGCGGagacggaGUCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGGAuaCGCCg------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 116328 0.68 0.468948
Target:  5'- gGUGCGUGCUgcUGCgGGCGCagCGcCGGGc -3'
miRNA:   3'- -UACGUACGGauACG-CCGCGg-GC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 83226 0.67 0.524255
Target:  5'- cUGCGgaagaucacgggGUUggggAUGCGGCGCCCGCGc- -3'
miRNA:   3'- uACGUa-----------CGGa---UACGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 11639 0.71 0.319504
Target:  5'- -cGCGU-CUUGcgGCGGUGCUCGCGGAa -3'
miRNA:   3'- uaCGUAcGGAUa-CGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29108 0.71 0.341764
Target:  5'- -cGCAgaggcUGCCggguaaguagGUGCGGCGaugCCGCGGAu -3'
miRNA:   3'- uaCGU-----ACGGa---------UACGCCGCg--GGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.