miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 107847 0.66 0.64827
Target:  5'- cGGCGUgGAGaCGaAGAUcgcGGCCGCCGc -3'
miRNA:   3'- cCCGUAgCUCcGCgUCUA---CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 105503 0.8 0.097542
Target:  5'- cGGGaguUCGuGGCGCAGAUcaucgcGGCCGCCAu -3'
miRNA:   3'- -CCCgu-AGCuCCGCGUCUA------CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 105424 0.66 0.688219
Target:  5'- -cGcCGUCGGGuGCaucGCGGAguacaugcUGGCCGCCAu -3'
miRNA:   3'- ccC-GUAGCUC-CG---CGUCU--------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 102668 0.66 0.658295
Target:  5'- cGGGCGcuacuUCGAGGCGC---UGGCCa--- -3'
miRNA:   3'- -CCCGU-----AGCUCCGCGucuACCGGcggu -5'
25517 3' -60.6 NC_005337.1 + 101240 0.66 0.678279
Target:  5'- uGGGcCAUCGA-GCGC-GAUGaccuGCCGCUg -3'
miRNA:   3'- -CCC-GUAGCUcCGCGuCUAC----CGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 99656 0.71 0.361259
Target:  5'- cGGCAUCGccGCGCGGcugGGCgCGCCc -3'
miRNA:   3'- cCCGUAGCucCGCGUCua-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 99474 0.66 0.645259
Target:  5'- uGGCcacccgCGAcGCGCAGAUGGCgaccaugauccuguCGCCGa -3'
miRNA:   3'- cCCGua----GCUcCGCGUCUACCG--------------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 99025 0.66 0.64827
Target:  5'- cGGCcugCGAGGCGC---UGGaCGCCAg -3'
miRNA:   3'- cCCGua-GCUCCGCGucuACCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 96291 0.76 0.197823
Target:  5'- cGGCGUUGGGGUGCAuGAucugcaUGGCCGCgCAg -3'
miRNA:   3'- cCCGUAGCUCCGCGU-CU------ACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 96094 0.68 0.538762
Target:  5'- gGGGCAcgCGGGcGCgGCGGAggacaugcGGCCGCgCAg -3'
miRNA:   3'- -CCCGUa-GCUC-CG-CGUCUa-------CCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 95624 0.68 0.548535
Target:  5'- cGGCGUCcguGGGCGCGGGcccGCuCGCCAu -3'
miRNA:   3'- cCCGUAGc--UCCGCGUCUac-CG-GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 94090 0.71 0.385234
Target:  5'- cGGGCAccCGAGGgGCGG-UGGaCGCCu -3'
miRNA:   3'- -CCCGUa-GCUCCgCGUCuACCgGCGGu -5'
25517 3' -60.6 NC_005337.1 + 89910 0.72 0.348903
Target:  5'- uGGGCggCGGGGCGUcgccccacuccucacAGAgGGCCGCgCGg -3'
miRNA:   3'- -CCCGuaGCUCCGCG---------------UCUaCCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 89243 0.66 0.642248
Target:  5'- cGGaGCAUCGugcGGCaGUccacgcuccccacguAGAUGGCCGCg- -3'
miRNA:   3'- -CC-CGUAGCu--CCG-CG---------------UCUACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 86466 0.67 0.608119
Target:  5'- cGGCGUCGAaGCGCgAGG-GGUCGCa- -3'
miRNA:   3'- cCCGUAGCUcCGCG-UCUaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 84892 0.71 0.401791
Target:  5'- cGGCcgCGGGGgGCGGugcggcGGUCGCCGc -3'
miRNA:   3'- cCCGuaGCUCCgCGUCua----CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 83970 0.71 0.385234
Target:  5'- aGGGCAgCGGcGGCGCGGGcgGGCaCGUCu -3'
miRNA:   3'- -CCCGUaGCU-CCGCGUCUa-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 83331 0.69 0.472302
Target:  5'- gGGGCGcggcgCGAGGCGCcccGGGaGGCCGaCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCG---UCUaCCGGC-GGu -5'
25517 3' -60.6 NC_005337.1 + 82395 0.67 0.598107
Target:  5'- gGGGCGgaagGAGGCGauggcgaAGAUGGagGCCAg -3'
miRNA:   3'- -CCCGUag--CUCCGCg------UCUACCggCGGU- -5'
25517 3' -60.6 NC_005337.1 + 82316 0.68 0.539737
Target:  5'- aGGGCAcCGA-GCGCAGGgacauguccaccauGCCGCCGa -3'
miRNA:   3'- -CCCGUaGCUcCGCGUCUac------------CGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.