miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 50769 0.66 0.987655
Target:  5'- gCACGCGuGCGGUUCccgcggucccuGCUcUCGcuguUCCa -3'
miRNA:   3'- gGUGCGU-CGCCAAG-----------CGAuAGCau--AGG- -5'
25519 5' -51.3 NC_005337.1 + 86567 0.66 0.987499
Target:  5'- cCCcCGCAGCacacuguGGggUCGCcGUCGUA-CCg -3'
miRNA:   3'- -GGuGCGUCG-------CCa-AGCGaUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 39645 0.66 0.987655
Target:  5'- aCACGCAGCGGcgcggcCGCguggggcgCGUGgccCCg -3'
miRNA:   3'- gGUGCGUCGCCaa----GCGaua-----GCAUa--GG- -5'
25519 5' -51.3 NC_005337.1 + 40547 0.66 0.987655
Target:  5'- gCGCGCGGUGGUgcgGUUcUCGaggaUGUCCu -3'
miRNA:   3'- gGUGCGUCGCCAag-CGAuAGC----AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 29216 0.66 0.992744
Target:  5'- gCUGCGCAGCGccgCGCggccgggCGUcgCCu -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGaua----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 109319 0.66 0.987499
Target:  5'- aCCACGCAcGCGGUgaggaugUCGUUcaCGUAgagcacgCCc -3'
miRNA:   3'- -GGUGCGU-CGCCA-------AGCGAuaGCAUa------GG- -5'
25519 5' -51.3 NC_005337.1 + 47894 0.66 0.987655
Target:  5'- gCGCGCAGUGGUaaaCGCggcCGUcaCCa -3'
miRNA:   3'- gGUGCGUCGCCAa--GCGauaGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 128563 0.66 0.98913
Target:  5'- aCACGCGGCcuucaUCGa-GUCGUGUCUg -3'
miRNA:   3'- gGUGCGUCGcca--AGCgaUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 71972 0.66 0.990464
Target:  5'- aUCGCGCuGCuGUUCGCcAUgGUggCCu -3'
miRNA:   3'- -GGUGCGuCGcCAAGCGaUAgCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 67295 0.66 0.993143
Target:  5'- cCCGCGUugaggcgguuguAGCGGUccauggcgcgcucgaUCGCgcgCGcGUCCg -3'
miRNA:   3'- -GGUGCG------------UCGCCA---------------AGCGauaGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 85973 0.66 0.987655
Target:  5'- cCCGCGCAccgcauGCGGaggCGCgaccgCGgGUCCa -3'
miRNA:   3'- -GGUGCGU------CGCCaa-GCGaua--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 62360 0.66 0.992642
Target:  5'- uCCACGCugucgucgaaGGCGGUgcgcaggUCGCUGgugCG-GUUCa -3'
miRNA:   3'- -GGUGCG----------UCGCCA-------AGCGAUa--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 99174 0.66 0.990464
Target:  5'- gCCGCGCGGaCGaugCGC-GUCGagAUCCg -3'
miRNA:   3'- -GGUGCGUC-GCcaaGCGaUAGCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 34855 0.66 0.98913
Target:  5'- aUAUGCGGCGGcgCGCcAUCc--UCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGaUAGcauAGG- -5'
25519 5' -51.3 NC_005337.1 + 123683 0.66 0.991665
Target:  5'- cCCcCGCGGCGGgaccggGCUcGUCGcggagAUCCg -3'
miRNA:   3'- -GGuGCGUCGCCaag---CGA-UAGCa----UAGG- -5'
25519 5' -51.3 NC_005337.1 + 94771 0.66 0.992433
Target:  5'- cCCGCGguGgGGUUCaccagcagcagcgcGCgcgCGUcgCCg -3'
miRNA:   3'- -GGUGCguCgCCAAG--------------CGauaGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 56586 0.66 0.987655
Target:  5'- gCCAUGCuGGUGGcgCGCUcgCa-GUCCa -3'
miRNA:   3'- -GGUGCG-UCGCCaaGCGAuaGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 37443 0.66 0.987655
Target:  5'- gCCACGCcGCGGcugCGCaccCGcagGUCCg -3'
miRNA:   3'- -GGUGCGuCGCCaa-GCGauaGCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 68948 0.66 0.991665
Target:  5'- cCCGCGCGGCGGcacCGg---CGUGcccuUCCa -3'
miRNA:   3'- -GGUGCGUCGCCaa-GCgauaGCAU----AGG- -5'
25519 5' -51.3 NC_005337.1 + 25526 0.66 0.991665
Target:  5'- uCCAgGCAGCGGcccaCGCgccgCGagaAUCCg -3'
miRNA:   3'- -GGUgCGUCGCCaa--GCGaua-GCa--UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.