miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 123477 1.15 0.003396
Target:  5'- uCCACGCAGCGGUUCGCUAUCGUAUCCa -3'
miRNA:   3'- -GGUGCGUCGCCAAGCGAUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 10438 0.79 0.497125
Target:  5'- cCUGCGCGGCGGUgcgCGC-GUCGUGcgCCa -3'
miRNA:   3'- -GGUGCGUCGCCAa--GCGaUAGCAUa-GG- -5'
25519 5' -51.3 NC_005337.1 + 60535 0.76 0.676813
Target:  5'- uCCACGCGGCugaGGgagUCGCUgaaguacacgaagagGUCGcUGUCCg -3'
miRNA:   3'- -GGUGCGUCG---CCa--AGCGA---------------UAGC-AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 67522 0.75 0.693428
Target:  5'- cCCGCGCgugcGGCGGUUgGUgaaguagggCGUGUCCg -3'
miRNA:   3'- -GGUGCG----UCGCCAAgCGaua------GCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 122403 0.75 0.693428
Target:  5'- gCUGCGCGGCGGcgCGCgg-CGccUGUCCg -3'
miRNA:   3'- -GGUGCGUCGCCaaGCGauaGC--AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 76064 0.75 0.730245
Target:  5'- gCCGCGCGGCGGUacgcCGCggucugcuuggcgGUCaUGUCCa -3'
miRNA:   3'- -GGUGCGUCGCCAa---GCGa------------UAGcAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 107121 0.74 0.763961
Target:  5'- uCgACGCGGCGGUgaCGCU---GUGUCCg -3'
miRNA:   3'- -GgUGCGUCGCCAa-GCGAuagCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 59738 0.74 0.763961
Target:  5'- gCCGCGCGGCGGa--GCg--CGUcUCCg -3'
miRNA:   3'- -GGUGCGUCGCCaagCGauaGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 116609 0.74 0.773625
Target:  5'- gCCGCGguGCGGcgCGUggaCGUGUCg -3'
miRNA:   3'- -GGUGCguCGCCaaGCGauaGCAUAGg -5'
25519 5' -51.3 NC_005337.1 + 80051 0.73 0.792542
Target:  5'- -gGCGCGGCGGa-CGCUGUC--AUCCg -3'
miRNA:   3'- ggUGCGUCGCCaaGCGAUAGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 44929 0.73 0.792542
Target:  5'- aCACGUGuccgcGCGGaUCGCUcaucuUCGUGUCCa -3'
miRNA:   3'- gGUGCGU-----CGCCaAGCGAu----AGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 36871 0.73 0.801777
Target:  5'- aCCACGCGguugcaguagauGCGGUUCGCgcggcgcggCGUggCCg -3'
miRNA:   3'- -GGUGCGU------------CGCCAAGCGaua------GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 118234 0.73 0.810851
Target:  5'- cCCGCGCGGCGGcaggCGCcgcagcgCGUGUaCCu -3'
miRNA:   3'- -GGUGCGUCGCCaa--GCGaua----GCAUA-GG- -5'
25519 5' -51.3 NC_005337.1 + 34584 0.72 0.869119
Target:  5'- gCGCGCAGCGcGUcgaaGCUGUCGcacgCCa -3'
miRNA:   3'- gGUGCGUCGC-CAag--CGAUAGCaua-GG- -5'
25519 5' -51.3 NC_005337.1 + 80415 0.72 0.869119
Target:  5'- gCuCGCGGUGGcgUCGCUgGUCGUGcCCg -3'
miRNA:   3'- gGuGCGUCGCCa-AGCGA-UAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 34627 0.72 0.869119
Target:  5'- gCCGCGCGGCGaugcCGCgcacGUCcGUGUCCc -3'
miRNA:   3'- -GGUGCGUCGCcaa-GCGa---UAG-CAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 112296 0.71 0.876602
Target:  5'- uCCGCGaaCAGCGGguugcUCGCgagGUCGUAguucacgCCg -3'
miRNA:   3'- -GGUGC--GUCGCCa----AGCGa--UAGCAUa------GG- -5'
25519 5' -51.3 NC_005337.1 + 91562 0.71 0.883856
Target:  5'- gCCACGUAcCGGUacaccUCGggGUCGUAUCg -3'
miRNA:   3'- -GGUGCGUcGCCA-----AGCgaUAGCAUAGg -5'
25519 5' -51.3 NC_005337.1 + 105493 0.71 0.883856
Target:  5'- uCCuCGCAGCaGGUcuuggcggUgGCUAUCGUuUCCu -3'
miRNA:   3'- -GGuGCGUCG-CCA--------AgCGAUAGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 56265 0.71 0.883856
Target:  5'- gCCgACGCGGUGGagUCGCUG-C-UGUCCa -3'
miRNA:   3'- -GG-UGCGUCGCCa-AGCGAUaGcAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.