miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 1338 0.7 0.921174
Target:  5'- gCCGCgGCGGCGGUaguugaacuccgCGCUcgCGUcAUCUg -3'
miRNA:   3'- -GGUG-CGUCGCCAa-----------GCGAuaGCA-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 1851 0.7 0.922312
Target:  5'- gCGCGCAGuUGGUg-GCcg-CGUGUCCg -3'
miRNA:   3'- gGUGCGUC-GCCAagCGauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 3281 0.68 0.963241
Target:  5'- gCCACguGCAGCGGcgUCG-UGUCGUAg-- -3'
miRNA:   3'- -GGUG--CGUCGCCa-AGCgAUAGCAUagg -5'
25519 5' -51.3 NC_005337.1 + 3435 0.7 0.933139
Target:  5'- cCCGCGCuuggacauGCGG-UCGag--CGUGUCCu -3'
miRNA:   3'- -GGUGCGu-------CGCCaAGCgauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 4362 0.69 0.951795
Target:  5'- gCAgGCGGCGGU--GUUGUUGUAcCCg -3'
miRNA:   3'- gGUgCGUCGCCAagCGAUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 6217 0.69 0.95966
Target:  5'- gCAUGUGGUGGUgcaGCag-CGUGUCCc -3'
miRNA:   3'- gGUGCGUCGCCAag-CGauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 9150 0.7 0.927851
Target:  5'- gCCGCuuGGCGG-UCGCUAgccUCGUcgUCa -3'
miRNA:   3'- -GGUGcgUCGCCaAGCGAU---AGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 10438 0.79 0.497125
Target:  5'- cCUGCGCGGCGGUgcgCGC-GUCGUGcgCCa -3'
miRNA:   3'- -GGUGCGUCGCCAa--GCGaUAGCAUa-GG- -5'
25519 5' -51.3 NC_005337.1 + 12334 0.71 0.90419
Target:  5'- uCCGCGUGGUGGUgcagCGCcGUCc-GUCCg -3'
miRNA:   3'- -GGUGCGUCGCCAa---GCGaUAGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 13773 0.67 0.980166
Target:  5'- -aACGCGGCgaGGggCGCcAggucguagcUCGUGUCCg -3'
miRNA:   3'- ggUGCGUCG--CCaaGCGaU---------AGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 15533 0.69 0.951795
Target:  5'- gCACGCAGCGca--GC-AUCGUcUCCa -3'
miRNA:   3'- gGUGCGUCGCcaagCGaUAGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 15779 0.69 0.938176
Target:  5'- -gACGaGGCGGcuagUCGCUGUCGcUGUCg -3'
miRNA:   3'- ggUGCgUCGCCa---AGCGAUAGC-AUAGg -5'
25519 5' -51.3 NC_005337.1 + 17047 0.66 0.992744
Target:  5'- uCCGCGCGGUcugcacGUUcCGCUGgaugCGcAUCCa -3'
miRNA:   3'- -GGUGCGUCGc-----CAA-GCGAUa---GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 20731 0.67 0.984246
Target:  5'- gUACaGaCAGCGGUUgGC-AUCGUGUUUg -3'
miRNA:   3'- gGUG-C-GUCGCCAAgCGaUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 22750 0.7 0.927851
Target:  5'- gCACGCGGCGGagCGCgggcUCgGUAUgCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGau--AG-CAUAgG- -5'
25519 5' -51.3 NC_005337.1 + 25526 0.66 0.991665
Target:  5'- uCCAgGCAGCGGcccaCGCgccgCGagaAUCCg -3'
miRNA:   3'- -GGUgCGUCGCCaa--GCGaua-GCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 27489 0.67 0.98603
Target:  5'- uCCACGCGGUagcacccgucGGggUCGaUGUCGUGcgCCa -3'
miRNA:   3'- -GGUGCGUCG----------CCa-AGCgAUAGCAUa-GG- -5'
25519 5' -51.3 NC_005337.1 + 28847 0.69 0.955847
Target:  5'- aCCAUGCGGCaGUaCGCcgugcUgGUGUCCa -3'
miRNA:   3'- -GGUGCGUCGcCAaGCGau---AgCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 29216 0.66 0.992744
Target:  5'- gCUGCGCAGCGccgCGCggccgggCGUcgCCu -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGaua----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 31639 0.7 0.915332
Target:  5'- aCACGCGGUGGcagaucagcgagUCGCgGUCGggguagcgGUCCg -3'
miRNA:   3'- gGUGCGUCGCCa-----------AGCGaUAGCa-------UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.