miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 133725 0.68 0.966594
Target:  5'- aCGCGCGGCGGUg-GCgga-GUGgcgCCg -3'
miRNA:   3'- gGUGCGUCGCCAagCGauagCAUa--GG- -5'
25519 5' -51.3 NC_005337.1 + 133725 0.68 0.966594
Target:  5'- aCGCGCGGCGGUg-GCgga-GUGgcgCCg -3'
miRNA:   3'- gGUGCGUCGCCAagCGauagCAUa--GG- -5'
25519 5' -51.3 NC_005337.1 + 131546 0.67 0.98603
Target:  5'- cCCGCuacCGGCGGacgucgUCGCgcUCGUGcUCCu -3'
miRNA:   3'- -GGUGc--GUCGCCa-----AGCGauAGCAU-AGG- -5'
25519 5' -51.3 NC_005337.1 + 131491 0.66 0.991665
Target:  5'- aCAUGCGGCaccGGUcCGCgcUCGUGgacagCCu -3'
miRNA:   3'- gGUGCGUCG---CCAaGCGauAGCAUa----GG- -5'
25519 5' -51.3 NC_005337.1 + 131169 0.66 0.991551
Target:  5'- gCCGCGgucGCGGUcgcggagUCGCUGgcCGUcgCCg -3'
miRNA:   3'- -GGUGCgu-CGCCA-------AGCGAUa-GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 130911 0.66 0.992744
Target:  5'- gCCGCGCacaccuccugcaAGCGG-UCGCUG----AUCCa -3'
miRNA:   3'- -GGUGCG------------UCGCCaAGCGAUagcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 128563 0.66 0.98913
Target:  5'- aCACGCGGCcuucaUCGa-GUCGUGUCUg -3'
miRNA:   3'- gGUGCGUCGcca--AGCgaUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 128321 0.66 0.991665
Target:  5'- gCGCGCGGCGcGagCGCgacugcUCG-GUCCa -3'
miRNA:   3'- gGUGCGUCGC-CaaGCGau----AGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 127634 0.7 0.916521
Target:  5'- aCCGCGCGGCGGUcuUCaacccuGCgg-CGUG-CCg -3'
miRNA:   3'- -GGUGCGUCGCCA--AG------CGauaGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 126205 0.68 0.969116
Target:  5'- gUCGCGCGuccucGCGG-UCGCggaggaggccCGUGUCCg -3'
miRNA:   3'- -GGUGCGU-----CGCCaAGCGaua-------GCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 123683 0.66 0.991665
Target:  5'- cCCcCGCGGCGGgaccggGCUcGUCGcggagAUCCg -3'
miRNA:   3'- -GGuGCGUCGCCaag---CGA-UAGCa----UAGG- -5'
25519 5' -51.3 NC_005337.1 + 123477 1.15 0.003396
Target:  5'- uCCACGCAGCGGUUCGCUAUCGUAUCCa -3'
miRNA:   3'- -GGUGCGUCGCCAAGCGAUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 122403 0.75 0.693428
Target:  5'- gCUGCGCGGCGGcgCGCgg-CGccUGUCCg -3'
miRNA:   3'- -GGUGCGUCGCCaaGCGauaGC--AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 120237 0.68 0.969724
Target:  5'- gCCAUGgAGCGGUaccCGCagAUgGUGUCUc -3'
miRNA:   3'- -GGUGCgUCGCCAa--GCGa-UAgCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 118783 0.67 0.980166
Target:  5'- -gACGcCGGCGGcggCGCcGUCGUG-CCg -3'
miRNA:   3'- ggUGC-GUCGCCaa-GCGaUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 118234 0.73 0.810851
Target:  5'- cCCGCGCGGCGGcaggCGCcgcagcgCGUGUaCCu -3'
miRNA:   3'- -GGUGCGUCGCCaa--GCGaua----GCAUA-GG- -5'
25519 5' -51.3 NC_005337.1 + 116609 0.74 0.773625
Target:  5'- gCCGCGguGCGGcgCGUggaCGUGUCg -3'
miRNA:   3'- -GGUGCguCGCCaaGCGauaGCAUAGg -5'
25519 5' -51.3 NC_005337.1 + 113138 0.66 0.991551
Target:  5'- aCGCGCuGCGGUacgUGCUGUucgcggugcgcugCGUGgcggCCg -3'
miRNA:   3'- gGUGCGuCGCCAa--GCGAUA-------------GCAUa---GG- -5'
25519 5' -51.3 NC_005337.1 + 112296 0.71 0.876602
Target:  5'- uCCGCGaaCAGCGGguugcUCGCgagGUCGUAguucacgCCg -3'
miRNA:   3'- -GGUGC--GUCGCCa----AGCGa--UAGCAUa------GG- -5'
25519 5' -51.3 NC_005337.1 + 109319 0.66 0.987499
Target:  5'- aCCACGCAcGCGGUgaggaugUCGUUcaCGUAgagcacgCCc -3'
miRNA:   3'- -GGUGCGU-CGCCA-------AGCGAuaGCAUa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.