miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 97061 0.68 0.963241
Target:  5'- gCCACGCAcgcGCGGcgCGCgguggucugCGUGcCCa -3'
miRNA:   3'- -GGUGCGU---CGCCaaGCGaua------GCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 22750 0.7 0.927851
Target:  5'- gCACGCGGCGGagCGCgggcUCgGUAUgCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGau--AG-CAUAgG- -5'
25519 5' -51.3 NC_005337.1 + 40019 0.69 0.942963
Target:  5'- uCCGCGCGGUGGagaUGCUAgcgggCGUcgUCg -3'
miRNA:   3'- -GGUGCGUCGCCaa-GCGAUa----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 88871 0.69 0.947502
Target:  5'- gCCGCGCAGUGGagCGUcagcaccggGUCGgugGUCUc -3'
miRNA:   3'- -GGUGCGUCGCCaaGCGa--------UAGCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 15533 0.69 0.951795
Target:  5'- gCACGCAGCGca--GC-AUCGUcUCCa -3'
miRNA:   3'- gGUGCGUCGCcaagCGaUAGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 68103 0.69 0.955847
Target:  5'- -gACGCGGCGGUggUCGUacUCGggGUCg -3'
miRNA:   3'- ggUGCGUCGCCA--AGCGauAGCa-UAGg -5'
25519 5' -51.3 NC_005337.1 + 93813 0.69 0.95966
Target:  5'- gCUGCGCAGCuGcggCGCUAUCuUGUUCa -3'
miRNA:   3'- -GGUGCGUCGcCaa-GCGAUAGcAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 32102 0.68 0.962893
Target:  5'- gCACGUuguacauGGCGGcgCGCaUGUccagCGUGUCCa -3'
miRNA:   3'- gGUGCG-------UCGCCaaGCG-AUA----GCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 3281 0.68 0.963241
Target:  5'- gCCACguGCAGCGGcgUCG-UGUCGUAg-- -3'
miRNA:   3'- -GGUG--CGUCGCCa-AGCgAUAGCAUagg -5'
25519 5' -51.3 NC_005337.1 + 74573 0.7 0.91048
Target:  5'- gCCGCGCGgcacGCGGacgCGCUGUCGcgcAUCg -3'
miRNA:   3'- -GGUGCGU----CGCCaa-GCGAUAGCa--UAGg -5'
25519 5' -51.3 NC_005337.1 + 66085 0.71 0.90419
Target:  5'- gCCGCgGCGGCGGaggCGCUGUgCGgcGUCUg -3'
miRNA:   3'- -GGUG-CGUCGCCaa-GCGAUA-GCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 66767 0.71 0.890874
Target:  5'- gCACGC-GCGGgcCGCUGggCGUGcucUCCa -3'
miRNA:   3'- gGUGCGuCGCCaaGCGAUa-GCAU---AGG- -5'
25519 5' -51.3 NC_005337.1 + 60535 0.76 0.676813
Target:  5'- uCCACGCGGCugaGGgagUCGCUgaaguacacgaagagGUCGcUGUCCg -3'
miRNA:   3'- -GGUGCGUCG---CCa--AGCGA---------------UAGC-AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 122403 0.75 0.693428
Target:  5'- gCUGCGCGGCGGcgCGCgg-CGccUGUCCg -3'
miRNA:   3'- -GGUGCGUCGCCaaGCGauaGC--AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 76064 0.75 0.730245
Target:  5'- gCCGCGCGGCGGUacgcCGCggucugcuuggcgGUCaUGUCCa -3'
miRNA:   3'- -GGUGCGUCGCCAa---GCGa------------UAGcAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 80051 0.73 0.792542
Target:  5'- -gGCGCGGCGGa-CGCUGUC--AUCCg -3'
miRNA:   3'- ggUGCGUCGCCaaGCGAUAGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 44929 0.73 0.792542
Target:  5'- aCACGUGuccgcGCGGaUCGCUcaucuUCGUGUCCa -3'
miRNA:   3'- gGUGCGU-----CGCCaAGCGAu----AGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 56265 0.71 0.883856
Target:  5'- gCCgACGCGGUGGagUCGCUG-C-UGUCCa -3'
miRNA:   3'- -GG-UGCGUCGCCa-AGCGAUaGcAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 105493 0.71 0.883856
Target:  5'- uCCuCGCAGCaGGUcuuggcggUgGCUAUCGUuUCCu -3'
miRNA:   3'- -GGuGCGUCG-CCA--------AgCGAUAGCAuAGG- -5'
25519 5' -51.3 NC_005337.1 + 42359 0.71 0.890874
Target:  5'- uCCACGCGGCGa--CGCacGUCGUGaCCg -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGa-UAGCAUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.