Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 102940 | 0.68 | 0.812762 |
Target: 5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3' miRNA: 3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 99431 | 0.81 | 0.191899 |
Target: 5'- -cGUGCUGaGCCGCGGcgugggccaccUCGUGGACGCg -3' miRNA: 3'- cuCAUGAC-CGGCGCCu----------AGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 97673 | 0.67 | 0.859259 |
Target: 5'- ---cGCUccaGGCCGCGGGcgugcacgUgGUGGACGUc -3' miRNA: 3'- cucaUGA---CCGGCGCCU--------AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 97614 | 0.66 | 0.88155 |
Target: 5'- ---cGgUGGCCGCGGccuUCGcGGACGg -3' miRNA: 3'- cucaUgACCGGCGCCu--AGUaCCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 97458 | 0.66 | 0.901811 |
Target: 5'- ---aGgUGGuCCGCG--UCGUGGACGCc -3' miRNA: 3'- cucaUgACC-GGCGCcuAGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 96833 | 0.66 | 0.908095 |
Target: 5'- cGGGUGCgcaGCCGCGG--CGUGG-CGUu -3' miRNA: 3'- -CUCAUGac-CGGCGCCuaGUACCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 95602 | 0.69 | 0.781887 |
Target: 5'- cGGGUGCagcagcgcgccaUGGCgGCGuc-CGUGGGCGCg -3' miRNA: 3'- -CUCAUG------------ACCGgCGCcuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 95452 | 0.66 | 0.901811 |
Target: 5'- --cUACcGGCCGUucGGAgaacUCGUGGAuCGCg -3' miRNA: 3'- cucAUGaCCGGCG--CCU----AGUACCU-GCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 92954 | 0.66 | 0.908095 |
Target: 5'- -cGUGCUGG-UGCG---CGUGGACGCc -3' miRNA: 3'- cuCAUGACCgGCGCcuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 92519 | 0.67 | 0.843342 |
Target: 5'- aGAGccUGCgcGGCCGCcc--CAUGGACGCg -3' miRNA: 3'- -CUC--AUGa-CCGGCGccuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 90381 | 0.73 | 0.529696 |
Target: 5'- uGAG-ACUGGCCGUGGuaCGUGuGCGCg -3' miRNA: 3'- -CUCaUGACCGGCGCCuaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 88077 | 0.75 | 0.43425 |
Target: 5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3' miRNA: 3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 85399 | 0.74 | 0.461891 |
Target: 5'- uGGU-CUGGCCGcCGGG-CggGGACGCg -3' miRNA: 3'- cUCAuGACCGGC-GCCUaGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 83354 | 0.8 | 0.234148 |
Target: 5'- gGAGgccgACUGGCUGCGGAcCGgccgcUGGGCGCg -3' miRNA: 3'- -CUCa---UGACCGGCGCCUaGU-----ACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 80167 | 0.72 | 0.570056 |
Target: 5'- uGGUACgGGCCGUgccGGcgCGcGGACGCg -3' miRNA: 3'- cUCAUGaCCGGCG---CCuaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 77382 | 0.67 | 0.862343 |
Target: 5'- cGGUGCcgcaacaccagccgGcGCCGCGGGagGUGGAUGUg -3' miRNA: 3'- cUCAUGa-------------C-CGGCGCCUagUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 76523 | 0.66 | 0.907477 |
Target: 5'- cGGUGgUGGaaCCGCGGGUCGUcguaguugaugaaGG-CGCa -3' miRNA: 3'- cUCAUgACC--GGCGCCUAGUA-------------CCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 74567 | 0.73 | 0.529696 |
Target: 5'- --aUGCUGGCCGCGcGG-CAcgcGGACGCg -3' miRNA: 3'- cucAUGACCGGCGC-CUaGUa--CCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 71459 | 0.67 | 0.859259 |
Target: 5'- aAGUACcacGuGCCGCaGGUCucgcUGGACGCc -3' miRNA: 3'- cUCAUGa--C-CGGCGcCUAGu---ACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 71356 | 0.7 | 0.72377 |
Target: 5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3' miRNA: 3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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