Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 92519 | 0.67 | 0.843342 |
Target: 5'- aGAGccUGCgcGGCCGCcc--CAUGGACGCg -3' miRNA: 3'- -CUC--AUGa-CCGGCGccuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105442 | 0.68 | 0.817147 |
Target: 5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3' miRNA: 3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 133560 | 0.71 | 0.67304 |
Target: 5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3' miRNA: 3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52976 | 0.77 | 0.341751 |
Target: 5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3' miRNA: 3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 95452 | 0.66 | 0.901811 |
Target: 5'- --cUACcGGCCGUucGGAgaacUCGUGGAuCGCg -3' miRNA: 3'- cucAUGaCCGGCG--CCU----AGUACCU-GCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105505 | 0.67 | 0.859259 |
Target: 5'- gGAGUuCgUGGCgcagaucauCGCGGccgcCAUGGACGCg -3' miRNA: 3'- -CUCAuG-ACCG---------GCGCCua--GUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 112859 | 0.68 | 0.809223 |
Target: 5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3' miRNA: 3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 103887 | 0.77 | 0.326537 |
Target: 5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3' miRNA: 3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 97673 | 0.67 | 0.859259 |
Target: 5'- ---cGCUccaGGCCGCGGGcgugcacgUgGUGGACGUc -3' miRNA: 3'- cucaUGA---CCGGCGCCU--------AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 115030 | 0.81 | 0.193842 |
Target: 5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3' miRNA: 3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 102940 | 0.68 | 0.812762 |
Target: 5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3' miRNA: 3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 58811 | 0.67 | 0.843342 |
Target: 5'- cGAGgcCUcGCUGCGccaGAUCGUcGGGCGCg -3' miRNA: 3'- -CUCauGAcCGGCGC---CUAGUA-CCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130643 | 0.69 | 0.743566 |
Target: 5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3' miRNA: 3'- cucaUGACCgGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 35757 | 0.7 | 0.72377 |
Target: 5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3' miRNA: 3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52368 | 0.74 | 0.500126 |
Target: 5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3' miRNA: 3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 88077 | 0.75 | 0.43425 |
Target: 5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3' miRNA: 3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 48305 | 0.66 | 0.914137 |
Target: 5'- gGAGUACcuccagcggGGCaCGgGGAUgugCGUGGACuGCu -3' miRNA: 3'- -CUCAUGa--------CCG-GCgCCUA---GUACCUG-CG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 2192 | 0.66 | 0.901811 |
Target: 5'- cGGcGCaGGCgGCGGA-CGcGGGCGCg -3' miRNA: 3'- cUCaUGaCCGgCGCCUaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 37683 | 0.66 | 0.88155 |
Target: 5'- aGAGUuCgagGGCgGCGGcGUCcaGGACGCc -3' miRNA: 3'- -CUCAuGa--CCGgCGCC-UAGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 10828 | 0.67 | 0.866907 |
Target: 5'- -cGUGCUGGCgcUGCGGcgCGgaGGGCGa -3' miRNA: 3'- cuCAUGACCG--GCGCCuaGUa-CCUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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