miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 71285 0.66 0.714903
Target:  5'- cGCGUgGCGCUGGUgCGCUUCCGcACgCa -3'
miRNA:   3'- -UGUA-UGCGGCCGaGCGGAGGC-UGgGc -5'
25522 3' -60.7 NC_005337.1 + 124873 0.66 0.714903
Target:  5'- cGCAUGcCGCCuacGGCcuccgaggaccUCGCCgUCUGGCUCGa -3'
miRNA:   3'- -UGUAU-GCGG---CCG-----------AGCGG-AGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 76113 0.66 0.714903
Target:  5'- uCAUGCGCaCGcGCUUgcgcgcgaagGCCgCCGAUCCGu -3'
miRNA:   3'- uGUAUGCG-GC-CGAG----------CGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 62658 0.66 0.714903
Target:  5'- gACGUugGCCGGCauggccacgUUGCCgUUGACCa- -3'
miRNA:   3'- -UGUAugCGGCCG---------AGCGGaGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 84956 0.66 0.709092
Target:  5'- cGCGUGuCGCUGGauggccuccagguaUCGCCggUCCG-CCCGg -3'
miRNA:   3'- -UGUAU-GCGGCCg-------------AGCGG--AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 50411 0.66 0.709092
Target:  5'- ---cGCGUCGGUgacggagcggcgggCGCUUCCG-CCCGg -3'
miRNA:   3'- uguaUGCGGCCGa-------------GCGGAGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 76039 0.66 0.705204
Target:  5'- ---cGCGCCGGaCUUGCgCUCCauGACCg- -3'
miRNA:   3'- uguaUGCGGCC-GAGCG-GAGG--CUGGgc -5'
25522 3' -60.7 NC_005337.1 + 127695 0.66 0.705204
Target:  5'- -----gGCCGGCUCGUCcaUCCGGaCCGc -3'
miRNA:   3'- uguaugCGGCCGAGCGG--AGGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 116330 0.66 0.705204
Target:  5'- uGCGUGCugcuGCgGGCgcagCGCCgggCCauGACCCGc -3'
miRNA:   3'- -UGUAUG----CGgCCGa---GCGGa--GG--CUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 86388 0.66 0.705204
Target:  5'- aACAUGucCGCCaGGCggcugcgCGCgUCCGGCgCGa -3'
miRNA:   3'- -UGUAU--GCGG-CCGa------GCGgAGGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 37013 0.66 0.705204
Target:  5'- cACGUcgaaGCGCCGGCUCaCCgcCCGACa-- -3'
miRNA:   3'- -UGUA----UGCGGCCGAGcGGa-GGCUGggc -5'
25522 3' -60.7 NC_005337.1 + 59728 0.66 0.705204
Target:  5'- aGCAUcacGCGCCGcGCggcggagcgCGUCUCCGcgaGCUCGg -3'
miRNA:   3'- -UGUA---UGCGGC-CGa--------GCGGAGGC---UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 57016 0.66 0.705204
Target:  5'- cACGUAcuccCGCCGGCUgGaCgUCCGGCUg- -3'
miRNA:   3'- -UGUAU----GCGGCCGAgC-GgAGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 6983 0.66 0.704231
Target:  5'- aGCGggugACGCCGuGCUUGUCcauggcgcggacgUCCGcGCCCGc -3'
miRNA:   3'- -UGUa---UGCGGC-CGAGCGG-------------AGGC-UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 132198 0.66 0.704231
Target:  5'- gGCGUcgagcGCGCuCGcggacacGCUCGCCUCCauCCCGa -3'
miRNA:   3'- -UGUA-----UGCG-GC-------CGAGCGGAGGcuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 87919 0.66 0.695447
Target:  5'- cGCcUGCGCCGGCgcuucgugcaCGCCggCGgcaGCCCGg -3'
miRNA:   3'- -UGuAUGCGGCCGa---------GCGGagGC---UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 100678 0.66 0.695447
Target:  5'- cGCGUucGCGCCGcGCgCGCggCCGACgCGa -3'
miRNA:   3'- -UGUA--UGCGGC-CGaGCGgaGGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 128506 0.66 0.694468
Target:  5'- cGCGUACGUggucgcgCGGCUgccgccCGCCgCCGugCCa -3'
miRNA:   3'- -UGUAUGCG-------GCCGA------GCGGaGGCugGGc -5'
25522 3' -60.7 NC_005337.1 + 94857 0.66 0.69153
Target:  5'- aGCGgGCGCCcGCgcgugucgaacagCGCCUCCGgaaaccgcucGCCCGa -3'
miRNA:   3'- -UGUaUGCGGcCGa------------GCGGAGGC----------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 126044 0.66 0.68564
Target:  5'- uCAUgcGCGCCGGUgcggacgCGaCCcuugCCGACCUGg -3'
miRNA:   3'- uGUA--UGCGGCCGa------GC-GGa---GGCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.