miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 75168 0.66 0.86098
Target:  5'- cGGAccgcccucgucgccUCGCGCGcGucCGCGGGCcGCGAg -3'
miRNA:   3'- aCCU--------------AGCGCGC-Cu-GUGCUCGaUGCUg -5'
25525 3' -56.3 NC_005337.1 + 121789 0.66 0.870757
Target:  5'- cUGGA-CGCcgguGCGGACGCGGaggcGCUG-GACg -3'
miRNA:   3'- -ACCUaGCG----CGCCUGUGCU----CGAUgCUG- -5'
25525 3' -56.3 NC_005337.1 + 17027 0.66 0.878031
Target:  5'- cGGGcCGCGCGaaggcGCACG-GCaGCGGCa -3'
miRNA:   3'- aCCUaGCGCGCc----UGUGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 11546 0.66 0.891911
Target:  5'- -aGGUCGUccGCGGGCACG---UGCGACa -3'
miRNA:   3'- acCUAGCG--CGCCUGUGCucgAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 38522 0.66 0.863268
Target:  5'- cGcGAUCGCGgGGAU-CGuGC-ACGGCg -3'
miRNA:   3'- aC-CUAGCGCgCCUGuGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 132046 0.66 0.891911
Target:  5'- ---cUCGCGCGGuuccuGCGCGcGCUcGCGGCc -3'
miRNA:   3'- accuAGCGCGCC-----UGUGCuCGA-UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 89035 0.66 0.870757
Target:  5'- cGGAaCGCGCauGCGCGcGCUGCuGACc -3'
miRNA:   3'- aCCUaGCGCGccUGUGCuCGAUG-CUG- -5'
25525 3' -56.3 NC_005337.1 + 1075 0.66 0.891911
Target:  5'- cGGAcUGCG-GGACggaGCGGGCUAcagcCGGCg -3'
miRNA:   3'- aCCUaGCGCgCCUG---UGCUCGAU----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 99459 0.66 0.854788
Target:  5'- gUGGAcgCGCGCGuGCGCGAgggcgucuucgugGCcgUGCGGCg -3'
miRNA:   3'- -ACCUa-GCGCGCcUGUGCU-------------CG--AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 118112 0.66 0.878031
Target:  5'- gUGGAgcaaaCGCGG-CGCGAGCgcuacuuCGACg -3'
miRNA:   3'- -ACCUagc--GCGCCuGUGCUCGau-----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 104020 0.66 0.868533
Target:  5'- cUGGAgcagggcgacgccaUCGCGCGGAacgucuccuCGCGcacGCUcgACGACg -3'
miRNA:   3'- -ACCU--------------AGCGCGCCU---------GUGCu--CGA--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 31627 0.66 0.878031
Target:  5'- cUGcAUgGCGCGGGCGaagauccgGAGCUugaGCGACa -3'
miRNA:   3'- -ACcUAgCGCGCCUGUg-------CUCGA---UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 96093 0.66 0.885083
Target:  5'- cGGggCaCGCGGGCGCG-GCggAgGACa -3'
miRNA:   3'- aCCuaGcGCGCCUGUGCuCGa-UgCUG- -5'
25525 3' -56.3 NC_005337.1 + 125510 0.66 0.863268
Target:  5'- gUGGAggUCGUGCGGcuGCuCGuGCggUACGGCg -3'
miRNA:   3'- -ACCU--AGCGCGCC--UGuGCuCG--AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 115434 0.66 0.885083
Target:  5'- cGGcgCGUGCuGGCGauaGAGCcggcgUACGACg -3'
miRNA:   3'- aCCuaGCGCGcCUGUg--CUCG-----AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 132247 0.66 0.878031
Target:  5'- cGGAUCGcCGUGGcCAaaGAGCUG-GGCa -3'
miRNA:   3'- aCCUAGC-GCGCCuGUg-CUCGAUgCUG- -5'
25525 3' -56.3 NC_005337.1 + 64222 0.66 0.863268
Target:  5'- cGGucCGCGaCGGGCagcgccucuuuGCGGcGCUGCGGCg -3'
miRNA:   3'- aCCuaGCGC-GCCUG-----------UGCU-CGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 18909 0.66 0.885083
Target:  5'- cUGGAgCGuCGCGGGCuuGAGC-GCGuACc -3'
miRNA:   3'- -ACCUaGC-GCGCCUGugCUCGaUGC-UG- -5'
25525 3' -56.3 NC_005337.1 + 130172 0.66 0.863268
Target:  5'- cGGAggccgugCGCGCGGAgCACgcgGAGCUcauccuggaguGCGAg -3'
miRNA:   3'- aCCUa------GCGCGCCU-GUG---CUCGA-----------UGCUg -5'
25525 3' -56.3 NC_005337.1 + 2096 0.66 0.889886
Target:  5'- cGGcgCGCGCcgcgagcccggucaGGcACGCGuGCaGCGGCg -3'
miRNA:   3'- aCCuaGCGCG--------------CC-UGUGCuCGaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.