miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 120480 1.08 0.00266
Target:  5'- cUGGAUCGCGCGGACACGAGCUACGACc -3'
miRNA:   3'- -ACCUAGCGCGCCUGUGCUCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 110365 0.82 0.156808
Target:  5'- cGGG-CGCGCGGGCGCGcGGCaGCGACa -3'
miRNA:   3'- aCCUaGCGCGCCUGUGC-UCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 22637 0.8 0.19641
Target:  5'- cGGAUCcgcgaggccuucgGCGCGGACGCGcGGCUGCGGg -3'
miRNA:   3'- aCCUAG-------------CGCGCCUGUGC-UCGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 57272 0.77 0.296348
Target:  5'- gGGGcCGCGCGGggccggcGCGCGcGGCUGCGGCg -3'
miRNA:   3'- aCCUaGCGCGCC-------UGUGC-UCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 36619 0.77 0.29704
Target:  5'- cUGGAgcgCGCGCGcGAC-CGAGCgcaGCGACu -3'
miRNA:   3'- -ACCUa--GCGCGC-CUGuGCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 818 0.77 0.311123
Target:  5'- cGGAgccguccgcgCGCGCGGGCcCGGGCU-CGACg -3'
miRNA:   3'- aCCUa---------GCGCGCCUGuGCUCGAuGCUG- -5'
25525 3' -56.3 NC_005337.1 + 818 0.77 0.311123
Target:  5'- cGGAgccguccgcgCGCGCGGGCcCGGGCU-CGACg -3'
miRNA:   3'- aCCUa---------GCGCGCCUGuGCUCGAuGCUG- -5'
25525 3' -56.3 NC_005337.1 + 39948 0.76 0.340796
Target:  5'- cGGGcgccUCGCGCGGGCGCucgacgcauucGAGCgcgACGGCg -3'
miRNA:   3'- aCCU----AGCGCGCCUGUG-----------CUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 128318 0.76 0.348528
Target:  5'- ---cUCGCGCGcGGCGCGAGC-GCGACu -3'
miRNA:   3'- accuAGCGCGC-CUGUGCUCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 100397 0.76 0.372464
Target:  5'- -cGAgUGCGCGGGCGCGcGCUACGAg -3'
miRNA:   3'- acCUaGCGCGCCUGUGCuCGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 104284 0.75 0.389032
Target:  5'- aGGAguUCGCGCGGGCGguccgcgaGGGCgcgGCGGCg -3'
miRNA:   3'- aCCU--AGCGCGCCUGUg-------CUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 25117 0.75 0.406075
Target:  5'- cGGcgCGCGCGGACGCGuGaauauuCGGCa -3'
miRNA:   3'- aCCuaGCGCGCCUGUGCuCgau---GCUG- -5'
25525 3' -56.3 NC_005337.1 + 112456 0.75 0.414771
Target:  5'- gGGAgagCGCGCGcACgaaGAGCUGCGGCg -3'
miRNA:   3'- aCCUa--GCGCGCcUGug-CUCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 106792 0.75 0.414771
Target:  5'- cGGGUgcuacCGCGUGGACACGucggcGCUGCGGg -3'
miRNA:   3'- aCCUA-----GCGCGCCUGUGCu----CGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 4685 0.74 0.423581
Target:  5'- cGGucgcUCGCGCGGACuuGAGCagcACGGCc -3'
miRNA:   3'- aCCu---AGCGCGCCUGugCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 42542 0.74 0.44153
Target:  5'- cGGAcgCGCuGCGGGCGCuggugcGGCUGCGGCu -3'
miRNA:   3'- aCCUa-GCG-CGCCUGUGc-----UCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 2709 0.74 0.44153
Target:  5'- gGGA-CGCGgaGGAgCACGAGCgcgACGACg -3'
miRNA:   3'- aCCUaGCGCg-CCU-GUGCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 118927 0.74 0.450665
Target:  5'- cUGGAagcgUCGCGCGGGCGC-AGCgUGCGuCg -3'
miRNA:   3'- -ACCU----AGCGCGCCUGUGcUCG-AUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 81367 0.74 0.469239
Target:  5'- aGGAUCcguGCGCGGuu-CG-GCUGCGACg -3'
miRNA:   3'- aCCUAG---CGCGCCuguGCuCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 13071 0.74 0.469239
Target:  5'- cUGcugCGCGCGGGCGCGgaAGCgGCGACg -3'
miRNA:   3'- -ACcuaGCGCGCCUGUGC--UCGaUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.