miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 30248 0.71 0.628472
Target:  5'- cGGGUCagGCGCaGGCGCGGGCagGCGGu -3'
miRNA:   3'- aCCUAG--CGCGcCUGUGCUCGa-UGCUg -5'
25525 3' -56.3 NC_005337.1 + 38362 0.73 0.521218
Target:  5'- aGGcgCGCGCGGccgccgucgccgcgaGCACGAGCgcccugcuagACGAUg -3'
miRNA:   3'- aCCuaGCGCGCC---------------UGUGCUCGa---------UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 74942 0.72 0.537057
Target:  5'- cGGc-CGCGCGGAUGCGGuGCUGgGGCu -3'
miRNA:   3'- aCCuaGCGCGCCUGUGCU-CGAUgCUG- -5'
25525 3' -56.3 NC_005337.1 + 132802 0.72 0.567179
Target:  5'- gUGGggCGCGCGGACGCcaacGGauccGCGACg -3'
miRNA:   3'- -ACCuaGCGCGCCUGUGc---UCga--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 52980 0.71 0.59056
Target:  5'- cGGAgaugCGguuguugagcguguaCGCGGACACGcccgcccGGCUGCGGCu -3'
miRNA:   3'- aCCUa---GC---------------GCGCCUGUGC-------UCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 11455 0.71 0.597712
Target:  5'- -cGAUCaCGCGGACGCGcacGCUGCGGu -3'
miRNA:   3'- acCUAGcGCGCCUGUGCu--CGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 101257 0.71 0.597712
Target:  5'- cUGGAcgGCGCGGACGCGaAGaucGCGGCc -3'
miRNA:   3'- -ACCUagCGCGCCUGUGC-UCga-UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 68366 0.71 0.60795
Target:  5'- cGcGAUCGCGUGGAgCGaGGGCggUGCGACg -3'
miRNA:   3'- aC-CUAGCGCGCCU-GUgCUCG--AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 61921 0.71 0.618206
Target:  5'- cGcGAUCGCGCGGAacUugGcGUUGCGAg -3'
miRNA:   3'- aC-CUAGCGCGCCU--GugCuCGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 60223 0.73 0.517286
Target:  5'- uUGGG-CGCGgGGGCugGGGCUGgGGu -3'
miRNA:   3'- -ACCUaGCGCgCCUGugCUCGAUgCUg -5'
25525 3' -56.3 NC_005337.1 + 943 0.73 0.488198
Target:  5'- cGGA--GCGCGGACAUGcuGGCgGCGGCg -3'
miRNA:   3'- aCCUagCGCGCCUGUGC--UCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 81367 0.74 0.469239
Target:  5'- aGGAUCcguGCGCGGuu-CG-GCUGCGACg -3'
miRNA:   3'- aCCUAG---CGCGCCuguGCuCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 22637 0.8 0.19641
Target:  5'- cGGAUCcgcgaggccuucgGCGCGGACGCGcGGCUGCGGg -3'
miRNA:   3'- aCCUAG-------------CGCGCCUGUGC-UCGAUGCUg -5'
25525 3' -56.3 NC_005337.1 + 36619 0.77 0.29704
Target:  5'- cUGGAgcgCGCGCGcGAC-CGAGCgcaGCGACu -3'
miRNA:   3'- -ACCUa--GCGCGC-CUGuGCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 818 0.77 0.311123
Target:  5'- cGGAgccguccgcgCGCGCGGGCcCGGGCU-CGACg -3'
miRNA:   3'- aCCUa---------GCGCGCCUGuGCUCGAuGCUG- -5'
25525 3' -56.3 NC_005337.1 + 39948 0.76 0.340796
Target:  5'- cGGGcgccUCGCGCGGGCGCucgacgcauucGAGCgcgACGGCg -3'
miRNA:   3'- aCCU----AGCGCGCCUGUG-----------CUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 128318 0.76 0.348528
Target:  5'- ---cUCGCGCGcGGCGCGAGC-GCGACu -3'
miRNA:   3'- accuAGCGCGC-CUGUGCUCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 2709 0.74 0.44153
Target:  5'- gGGA-CGCGgaGGAgCACGAGCgcgACGACg -3'
miRNA:   3'- aCCUaGCGCg-CCU-GUGCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 42542 0.74 0.44153
Target:  5'- cGGAcgCGCuGCGGGCGCuggugcGGCUGCGGCu -3'
miRNA:   3'- aCCUa-GCG-CGCCUGUGc-----UCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 13071 0.74 0.469239
Target:  5'- cUGcugCGCGCGGGCGCGgaAGCgGCGACg -3'
miRNA:   3'- -ACcuaGCGCGCCUGUGC--UCGaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.