miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 72 0.68 0.784493
Target:  5'- gGcGGUCGUGCGGACgcacggacgcacggACGGGCUGacuCGAg -3'
miRNA:   3'- aC-CUAGCGCGCCUG--------------UGCUCGAU---GCUg -5'
25525 3' -56.3 NC_005337.1 + 72 0.68 0.784493
Target:  5'- gGcGGUCGUGCGGACgcacggacgcacggACGGGCUGacuCGAg -3'
miRNA:   3'- aC-CUAGCGCGCCUG--------------UGCUCGAU---GCUg -5'
25525 3' -56.3 NC_005337.1 + 684 0.69 0.718999
Target:  5'- cGGGcccuugCGCGCGGAgGCGaAGCUcgcgcgcacgcccGCGGCc -3'
miRNA:   3'- aCCUa-----GCGCGCCUgUGC-UCGA-------------UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 684 0.69 0.718999
Target:  5'- cGGGcccuugCGCGCGGAgGCGaAGCUcgcgcgcacgcccGCGGCc -3'
miRNA:   3'- aCCUa-----GCGCGCCUgUGC-UCGA-------------UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 732 0.68 0.796376
Target:  5'- gGGGUa-CGCGGGCGaGAGC-GCGGCg -3'
miRNA:   3'- aCCUAgcGCGCCUGUgCUCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 732 0.68 0.796376
Target:  5'- gGGGUa-CGCGGGCGaGAGC-GCGGCg -3'
miRNA:   3'- aCCUAgcGCGCCUGUgCUCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 818 0.77 0.311123
Target:  5'- cGGAgccguccgcgCGCGCGGGCcCGGGCU-CGACg -3'
miRNA:   3'- aCCUa---------GCGCGCCUGuGCUCGAuGCUG- -5'
25525 3' -56.3 NC_005337.1 + 818 0.77 0.311123
Target:  5'- cGGAgccguccgcgCGCGCGGGCcCGGGCU-CGACg -3'
miRNA:   3'- aCCUa---------GCGCGCCUGuGCUCGAuGCUG- -5'
25525 3' -56.3 NC_005337.1 + 860 0.68 0.796376
Target:  5'- cGGGcaGCGCGGGCGCG-GCcggGCGGa -3'
miRNA:   3'- aCCUagCGCGCCUGUGCuCGa--UGCUg -5'
25525 3' -56.3 NC_005337.1 + 860 0.68 0.796376
Target:  5'- cGGGcaGCGCGGGCGCG-GCcggGCGGa -3'
miRNA:   3'- aCCUagCGCGCCUGUGCuCGa--UGCUg -5'
25525 3' -56.3 NC_005337.1 + 943 0.73 0.488198
Target:  5'- cGGA--GCGCGGACAUGcuGGCgGCGGCg -3'
miRNA:   3'- aCCUagCGCGCCUGUGC--UCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 943 0.73 0.488198
Target:  5'- cGGA--GCGCGGACAUGcuGGCgGCGGCg -3'
miRNA:   3'- aCCUagCGCGCCUGUGC--UCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 1075 0.66 0.891911
Target:  5'- cGGAcUGCG-GGACggaGCGGGCUAcagcCGGCg -3'
miRNA:   3'- aCCUaGCGCgCCUG---UGCUCGAU----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 1075 0.66 0.891911
Target:  5'- cGGAcUGCG-GGACggaGCGGGCUAcagcCGGCg -3'
miRNA:   3'- aCCUaGCGCgCCUG---UGCUCGAU----GCUG- -5'
25525 3' -56.3 NC_005337.1 + 1170 0.68 0.768604
Target:  5'- cGGAgcggccCGCuagGCGGuGCGCGAGC-GCGGCa -3'
miRNA:   3'- aCCUa-----GCG---CGCC-UGUGCUCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 1274 0.68 0.787257
Target:  5'- aGGAUgGCccGCGGAgGCGGGUcgGCGGg -3'
miRNA:   3'- aCCUAgCG--CGCCUgUGCUCGa-UGCUg -5'
25525 3' -56.3 NC_005337.1 + 1634 0.66 0.891911
Target:  5'- cGGAggucgaugCGCGCGcccgcGGCgACGAGCUugGcCg -3'
miRNA:   3'- aCCUa-------GCGCGC-----CUG-UGCUCGAugCuG- -5'
25525 3' -56.3 NC_005337.1 + 2065 0.67 0.839567
Target:  5'- aUGGAggcgaGCGUGucCGCGAGCgcgcuCGACg -3'
miRNA:   3'- -ACCUag---CGCGCcuGUGCUCGau---GCUG- -5'
25525 3' -56.3 NC_005337.1 + 2096 0.66 0.889886
Target:  5'- cGGcgCGCGCcgcgagcccggucaGGcACGCGuGCaGCGGCg -3'
miRNA:   3'- aCCuaGCGCG--------------CC-UGUGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 2192 0.71 0.597712
Target:  5'- cGGcgCagGCgGCGGACGCGGGC-GCGGCc -3'
miRNA:   3'- aCCuaG--CG-CGCCUGUGCUCGaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.