miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 5' -61 NC_005337.1 + 38606 0.66 0.669544
Target:  5'- gCGCaGCGU--GGGCGUGCuGGGGAa- -3'
miRNA:   3'- aGCGgCGCAagCCCGCGCG-CCUCUag -5'
25525 5' -61 NC_005337.1 + 47316 0.66 0.699
Target:  5'- gCGUgGUcauGUUCGaGGCGCGCGu-GGUCa -3'
miRNA:   3'- aGCGgCG---CAAGC-CCGCGCGCcuCUAG- -5'
25525 5' -61 NC_005337.1 + 29224 0.66 0.699
Target:  5'- gCGCCGCGcggcCGGGCGuCGCcugccGGUCg -3'
miRNA:   3'- aGCGGCGCaa--GCCCGC-GCGccu--CUAG- -5'
25525 5' -61 NC_005337.1 + 121103 0.66 0.64975
Target:  5'- cCGCgagGCGgaCGcGGCGCccGCGGAGAUg -3'
miRNA:   3'- aGCGg--CGCaaGC-CCGCG--CGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 133062 0.66 0.683335
Target:  5'- uUCGuCCGCGUaCGcGGCGCcgGUggccgccuggaugcaGGAGAUCc -3'
miRNA:   3'- -AGC-GGCGCAaGC-CCGCG--CG---------------CCUCUAG- -5'
25525 5' -61 NC_005337.1 + 132101 0.66 0.659657
Target:  5'- gCGCCGUGcgcgUCGGcgccGUGCGCGGcAGGc- -3'
miRNA:   3'- aGCGGCGCa---AGCC----CGCGCGCC-UCUag -5'
25525 5' -61 NC_005337.1 + 36496 0.66 0.689223
Target:  5'- -gGCCGCGgcCGcGGCGCucgGCGcGAcGAUCc -3'
miRNA:   3'- agCGGCGCaaGC-CCGCG---CGC-CU-CUAG- -5'
25525 5' -61 NC_005337.1 + 920 0.66 0.699
Target:  5'- gCGCgGCGgcggcggCGaGGCG-GCGGAGcgCg -3'
miRNA:   3'- aGCGgCGCaa-----GC-CCGCgCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 78072 0.66 0.658667
Target:  5'- aUGCCGCGcuccuugCGGuagagcuuguuccGCGCGCuGAGGUCc -3'
miRNA:   3'- aGCGGCGCaa-----GCC-------------CGCGCGcCUCUAG- -5'
25525 5' -61 NC_005337.1 + 99660 0.66 0.64975
Target:  5'- aUCGCCGCGcggcUGGGCGCGCc------ -3'
miRNA:   3'- -AGCGGCGCaa--GCCCGCGCGccucuag -5'
25525 5' -61 NC_005337.1 + 66627 0.66 0.699
Target:  5'- aCGCCu--UUCGGGCGgGCGGuGGg- -3'
miRNA:   3'- aGCGGcgcAAGCCCGCgCGCCuCUag -5'
25525 5' -61 NC_005337.1 + 52008 0.66 0.699
Target:  5'- aCGCCGUGacggaCGGccGCGCGCGcGcGGUCa -3'
miRNA:   3'- aGCGGCGCaa---GCC--CGCGCGC-CuCUAG- -5'
25525 5' -61 NC_005337.1 + 133041 0.66 0.648758
Target:  5'- cUCGUCGUGUaCGGGCccgaucuccgagaGCGCGu-GGUCg -3'
miRNA:   3'- -AGCGGCGCAaGCCCG-------------CGCGCcuCUAG- -5'
25525 5' -61 NC_005337.1 + 128216 0.66 0.699
Target:  5'- gCGCCGC--UCGuGGCcgcggGCGCGGAcAUCc -3'
miRNA:   3'- aGCGGCGcaAGC-CCG-----CGCGCCUcUAG- -5'
25525 5' -61 NC_005337.1 + 98881 0.66 0.699
Target:  5'- gCGCCGCGcgcgCGGacuGCGCGCucgagcccGGGGAg- -3'
miRNA:   3'- aGCGGCGCaa--GCC---CGCGCG--------CCUCUag -5'
25525 5' -61 NC_005337.1 + 90305 0.66 0.64975
Target:  5'- cUCGCCGC---CGGGCGCGCcgccGuAGAUg -3'
miRNA:   3'- -AGCGGCGcaaGCCCGCGCGc---C-UCUAg -5'
25525 5' -61 NC_005337.1 + 19106 0.66 0.64975
Target:  5'- aCGCCgGCGUccgCGGGCGC-CGGcaucuccagguGGUCg -3'
miRNA:   3'- aGCGG-CGCAa--GCCCGCGcGCCu----------CUAG- -5'
25525 5' -61 NC_005337.1 + 10872 0.66 0.64975
Target:  5'- cUCGCCGag--CGGGCgagcaccacguGUGCGGGGAc- -3'
miRNA:   3'- -AGCGGCgcaaGCCCG-----------CGCGCCUCUag -5'
25525 5' -61 NC_005337.1 + 55263 0.66 0.699
Target:  5'- uUCGUCGCucUC-GGUGCGC-GAGGUCg -3'
miRNA:   3'- -AGCGGCGcaAGcCCGCGCGcCUCUAG- -5'
25525 5' -61 NC_005337.1 + 75185 0.66 0.699
Target:  5'- cUCGCgCGCGUccgCGGGC-CGC-GAGAc- -3'
miRNA:   3'- -AGCG-GCGCAa--GCCCGcGCGcCUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.