miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 5' -61 NC_005337.1 + 120516 1.09 0.000868
Target:  5'- cUCGCCGCGUUCGGGCGCGCGGAGAUCa -3'
miRNA:   3'- -AGCGGCGCAAGCCCGCGCGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 111215 0.81 0.093012
Target:  5'- cCGCCGCGUUCcGGCGCGCGGcGugcGUCa -3'
miRNA:   3'- aGCGGCGCAAGcCCGCGCGCCuC---UAG- -5'
25525 5' -61 NC_005337.1 + 100379 0.79 0.119725
Target:  5'- gUCGCCGCcuucgugcaucgaGUgcgCGGGCGCGCGcuacGAGAUCg -3'
miRNA:   3'- -AGCGGCG-------------CAa--GCCCGCGCGC----CUCUAG- -5'
25525 5' -61 NC_005337.1 + 101191 0.77 0.174414
Target:  5'- aUCGCCGCGaucaCGGGCaccgccugcuuCGCGGAGGUCg -3'
miRNA:   3'- -AGCGGCGCaa--GCCCGc----------GCGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 110359 0.76 0.187649
Target:  5'- cUGCCGCGggcgcgCGGGCGCGCGGcAGc-- -3'
miRNA:   3'- aGCGGCGCaa----GCCCGCGCGCC-UCuag -5'
25525 5' -61 NC_005337.1 + 66186 0.76 0.192253
Target:  5'- cCGCCGCGUcCGGG-GCGaCGGGGAgcUCg -3'
miRNA:   3'- aGCGGCGCAaGCCCgCGC-GCCUCU--AG- -5'
25525 5' -61 NC_005337.1 + 91197 0.75 0.222
Target:  5'- gCGCCGCGaugcggaCGGGCGCGCcgccGGuGGUCa -3'
miRNA:   3'- aGCGGCGCaa-----GCCCGCGCG----CCuCUAG- -5'
25525 5' -61 NC_005337.1 + 123686 0.74 0.249705
Target:  5'- cCGCgGCGggacCGGGCucguCGCGGAGAUCc -3'
miRNA:   3'- aGCGgCGCaa--GCCCGc---GCGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 80509 0.74 0.25204
Target:  5'- -gGCCGgGggCGGGCacgccgaggcccgggGCGCGGAGAUg -3'
miRNA:   3'- agCGGCgCaaGCCCG---------------CGCGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 99252 0.74 0.255577
Target:  5'- cUCGCCGCGgaC-GGCGaCGCGGGGuUCg -3'
miRNA:   3'- -AGCGGCGCaaGcCCGC-GCGCCUCuAG- -5'
25525 5' -61 NC_005337.1 + 11336 0.74 0.260959
Target:  5'- gUCGUCGCGgcCGGGgauggagaagagcCGCGUGGAGAUg -3'
miRNA:   3'- -AGCGGCGCaaGCCC-------------GCGCGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 97058 0.74 0.261562
Target:  5'- aUCGCCaCGcacgCGcGGCGCGCGGuGGUCu -3'
miRNA:   3'- -AGCGGcGCaa--GC-CCGCGCGCCuCUAG- -5'
25525 5' -61 NC_005337.1 + 88262 0.74 0.273874
Target:  5'- cCGgCGCGccggCGGGCGcCGCGGAGGa- -3'
miRNA:   3'- aGCgGCGCaa--GCCCGC-GCGCCUCUag -5'
25525 5' -61 NC_005337.1 + 977 0.73 0.299883
Target:  5'- -aGCgGCGgggcuggCGcGGCGCGCGGAGggCg -3'
miRNA:   3'- agCGgCGCaa-----GC-CCGCGCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 100674 0.73 0.299883
Target:  5'- aCGCCGCGUUCGcgccgcGCGCGCGGccGAc- -3'
miRNA:   3'- aGCGGCGCAAGCc-----CGCGCGCCu-CUag -5'
25525 5' -61 NC_005337.1 + 87783 0.73 0.299883
Target:  5'- gCGCCGCGgugUCGGcCGCGCGGGc--- -3'
miRNA:   3'- aGCGGCGCa--AGCCcGCGCGCCUcuag -5'
25525 5' -61 NC_005337.1 + 977 0.73 0.299883
Target:  5'- -aGCgGCGgggcuggCGcGGCGCGCGGAGggCg -3'
miRNA:   3'- agCGgCGCaa-----GC-CCGCGCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 108602 0.73 0.313587
Target:  5'- aCGCCGCcUUCGagggccgcGGCGCcgagGUGGAGAUCg -3'
miRNA:   3'- aGCGGCGcAAGC--------CCGCG----CGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 124434 0.72 0.342402
Target:  5'- aCGCCGCGcgCGGGUGCGgGGc---- -3'
miRNA:   3'- aGCGGCGCaaGCCCGCGCgCCucuag -5'
25525 5' -61 NC_005337.1 + 33583 0.72 0.342402
Target:  5'- gCGCCGCGUcgcgUCGGccGCGCGCGcGGcgCg -3'
miRNA:   3'- aGCGGCGCA----AGCC--CGCGCGCcUCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.