Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25525 | 5' | -61 | NC_005337.1 | + | 100752 | 0.7 | 0.4575 |
Target: 5'- aCGaCGCGUgcagCcGGCGCacgGCGGAGAUCu -3' miRNA: 3'- aGCgGCGCAa---GcCCGCG---CGCCUCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 84893 | 0.71 | 0.373079 |
Target: 5'- -gGCCGCGgg-GGGCgGUGCGGcGGUCg -3' miRNA: 3'- agCGGCGCaagCCCG-CGCGCCuCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 37894 | 0.71 | 0.397282 |
Target: 5'- cCGCCGCcugcUCGGGCGCGaccGGGUCg -3' miRNA: 3'- aGCGGCGca--AGCCCGCGCgccUCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 39659 | 0.71 | 0.405571 |
Target: 5'- -gGCCGCGUg-GGGCGCGUGGccccGGGc- -3' miRNA: 3'- agCGGCGCAagCCCGCGCGCC----UCUag -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 43831 | 0.7 | 0.431078 |
Target: 5'- aCGCUGCag-CGGGCcggcgGCGCgguGGAGAUCg -3' miRNA: 3'- aGCGGCGcaaGCCCG-----CGCG---CCUCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 69283 | 0.7 | 0.431078 |
Target: 5'- cCGCCGCGcgcgaCGGGCaguucGCGCgGGAGAa- -3' miRNA: 3'- aGCGGCGCaa---GCCCG-----CGCG-CCUCUag -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 77402 | 0.7 | 0.443298 |
Target: 5'- gCGCCGCGggagguggaugugCGGGCccagcgaggcccGCGUGGAGggCa -3' miRNA: 3'- aGCGGCGCaa-----------GCCCG------------CGCGCCUCuaG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 23082 | 0.7 | 0.448595 |
Target: 5'- -gGCCGUGccCGGcaucguGCGCGCGGuGGUCa -3' miRNA: 3'- agCGGCGCaaGCC------CGCGCGCCuCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 109176 | 0.7 | 0.4575 |
Target: 5'- gCGCCGCGc-CGcGCGgGCGGAGcUCg -3' miRNA: 3'- aGCGGCGCaaGCcCGCgCGCCUCuAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 44218 | 0.72 | 0.35751 |
Target: 5'- cCGCCGCGgagCGGGCgaGCGCcGAGGccgUCg -3' miRNA: 3'- aGCGGCGCaa-GCCCG--CGCGcCUCU---AG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 100674 | 0.73 | 0.299883 |
Target: 5'- aCGCCGCGUUCGcgccgcGCGCGCGGccGAc- -3' miRNA: 3'- aGCGGCGCAAGCc-----CGCGCGCCu-CUag -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 87783 | 0.73 | 0.299883 |
Target: 5'- gCGCCGCGgugUCGGcCGCGCGGGc--- -3' miRNA: 3'- aGCGGCGCa--AGCCcGCGCGCCUcuag -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 110359 | 0.76 | 0.187649 |
Target: 5'- cUGCCGCGggcgcgCGGGCGCGCGGcAGc-- -3' miRNA: 3'- aGCGGCGCaa----GCCCGCGCGCC-UCuag -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 91197 | 0.75 | 0.222 |
Target: 5'- gCGCCGCGaugcggaCGGGCGCGCcgccGGuGGUCa -3' miRNA: 3'- aGCGGCGCaa-----GCCCGCGCG----CCuCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 123686 | 0.74 | 0.249705 |
Target: 5'- cCGCgGCGggacCGGGCucguCGCGGAGAUCc -3' miRNA: 3'- aGCGgCGCaa--GCCCGc---GCGCCUCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 80509 | 0.74 | 0.25204 |
Target: 5'- -gGCCGgGggCGGGCacgccgaggcccgggGCGCGGAGAUg -3' miRNA: 3'- agCGGCgCaaGCCCG---------------CGCGCCUCUAg -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 99252 | 0.74 | 0.255577 |
Target: 5'- cUCGCCGCGgaC-GGCGaCGCGGGGuUCg -3' miRNA: 3'- -AGCGGCGCaaGcCCGC-GCGCCUCuAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 11336 | 0.74 | 0.260959 |
Target: 5'- gUCGUCGCGgcCGGGgauggagaagagcCGCGUGGAGAUg -3' miRNA: 3'- -AGCGGCGCaaGCCC-------------GCGCGCCUCUAg -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 97058 | 0.74 | 0.261562 |
Target: 5'- aUCGCCaCGcacgCGcGGCGCGCGGuGGUCu -3' miRNA: 3'- -AGCGGcGCaa--GC-CCGCGCGCCuCUAG- -5' |
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25525 | 5' | -61 | NC_005337.1 | + | 977 | 0.73 | 0.299883 |
Target: 5'- -aGCgGCGgggcuggCGcGGCGCGCGGAGggCg -3' miRNA: 3'- agCGgCGCaa-----GC-CCGCGCGCCUCuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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