miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 5' -61 NC_005337.1 + 920 0.66 0.699
Target:  5'- gCGCgGCGgcggcggCGaGGCG-GCGGAGcgCg -3'
miRNA:   3'- aGCGgCGCaa-----GC-CCGCgCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 920 0.66 0.699
Target:  5'- gCGCgGCGgcggcggCGaGGCG-GCGGAGcgCg -3'
miRNA:   3'- aGCGgCGCaa-----GC-CCGCgCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 977 0.73 0.299883
Target:  5'- -aGCgGCGgggcuggCGcGGCGCGCGGAGggCg -3'
miRNA:   3'- agCGgCGCaa-----GC-CCGCGCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 977 0.73 0.299883
Target:  5'- -aGCgGCGgggcuggCGcGGCGCGCGGAGggCg -3'
miRNA:   3'- agCGgCGCaa-----GC-CCGCGCGCCUCuaG- -5'
25525 5' -61 NC_005337.1 + 3647 0.69 0.503367
Target:  5'- gCGCCGCGgccucgUCGucCGCGCagucGGGGGUCu -3'
miRNA:   3'- aGCGGCGCa-----AGCccGCGCG----CCUCUAG- -5'
25525 5' -61 NC_005337.1 + 10235 0.68 0.570621
Target:  5'- -aGCCGCGg-CaGGCGCGCGGccuUCg -3'
miRNA:   3'- agCGGCGCaaGcCCGCGCGCCucuAG- -5'
25525 5' -61 NC_005337.1 + 10822 0.69 0.52132
Target:  5'- aCGCCGCGggCGGGUcuagcgcaucucuGUGCGGG--UCu -3'
miRNA:   3'- aGCGGCGCaaGCCCG-------------CGCGCCUcuAG- -5'
25525 5' -61 NC_005337.1 + 10872 0.66 0.64975
Target:  5'- cUCGCCGag--CGGGCgagcaccacguGUGCGGGGAc- -3'
miRNA:   3'- -AGCGGCgcaaGCCCG-----------CGCGCCUCUag -5'
25525 5' -61 NC_005337.1 + 11336 0.74 0.260959
Target:  5'- gUCGUCGCGgcCGGGgauggagaagagcCGCGUGGAGAUg -3'
miRNA:   3'- -AGCGGCGCaaGCCC-------------GCGCGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 11751 0.67 0.610063
Target:  5'- gUCGCCGCGccaGGGCcaGCaGC-GAGGUCu -3'
miRNA:   3'- -AGCGGCGCaagCCCG--CG-CGcCUCUAG- -5'
25525 5' -61 NC_005337.1 + 12266 0.67 0.619979
Target:  5'- cCGUCGCGgcCGGGUcgcaccccgcGCGCaGGAGcUCg -3'
miRNA:   3'- aGCGGCGCaaGCCCG----------CGCG-CCUCuAG- -5'
25525 5' -61 NC_005337.1 + 12721 0.68 0.570621
Target:  5'- gCGCCGCGcUCGaggaGGUGC-CGGAGGa- -3'
miRNA:   3'- aGCGGCGCaAGC----CCGCGcGCCUCUag -5'
25525 5' -61 NC_005337.1 + 13071 0.69 0.512784
Target:  5'- cUGCUGCGcgCGGGCGCggaaGCGGcGAc- -3'
miRNA:   3'- aGCGGCGCaaGCCCGCG----CGCCuCUag -5'
25525 5' -61 NC_005337.1 + 16169 0.68 0.541445
Target:  5'- gCGCCGCGUUUGcuccaccacGCGC-CGGAGAg- -3'
miRNA:   3'- aGCGGCGCAAGCc--------CGCGcGCCUCUag -5'
25525 5' -61 NC_005337.1 + 17805 0.68 0.580436
Target:  5'- cUGUCGCGUgaaguacuccUCGauGCGCGCGGcGAUCu -3'
miRNA:   3'- aGCGGCGCA----------AGCc-CGCGCGCCuCUAG- -5'
25525 5' -61 NC_005337.1 + 19106 0.66 0.64975
Target:  5'- aCGCCgGCGUccgCGGGCGC-CGGcaucuccagguGGUCg -3'
miRNA:   3'- aGCGG-CGCAa--GCCCGCGcGCCu----------CUAG- -5'
25525 5' -61 NC_005337.1 + 21175 0.67 0.629903
Target:  5'- uUCGUCGCG--CGGaccuGCGCGCGcAGGUCc -3'
miRNA:   3'- -AGCGGCGCaaGCC----CGCGCGCcUCUAG- -5'
25525 5' -61 NC_005337.1 + 23082 0.7 0.448595
Target:  5'- -gGCCGUGccCGGcaucguGCGCGCGGuGGUCa -3'
miRNA:   3'- agCGGCGCaaGCC------CGCGCGCCuCUAG- -5'
25525 5' -61 NC_005337.1 + 24048 0.66 0.689223
Target:  5'- -aGCUGUGcUCGGGCGaCGCGGc---- -3'
miRNA:   3'- agCGGCGCaAGCCCGC-GCGCCucuag -5'
25525 5' -61 NC_005337.1 + 24194 0.66 0.659657
Target:  5'- gCGCCGUuaccggCGaGGCGCGCGucGAGGUg -3'
miRNA:   3'- aGCGGCGcaa---GC-CCGCGCGC--CUCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.