Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25526 | 3' | -51.5 | NC_005337.1 | + | 9330 | 0.66 | 0.980624 |
Target: 5'- aGCCGAGCUGCGUccggagGGACUgcugUCGg -3' miRNA: 3'- -UGGUUCGACGCGua----CUUGAgca-AGCg -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 53024 | 0.66 | 0.978307 |
Target: 5'- aACCugcGGCUGUGCggGAGCUgcCGg-CGCa -3' miRNA: 3'- -UGGu--UCGACGCGuaCUUGA--GCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 35955 | 0.66 | 0.986473 |
Target: 5'- uGCCGuugcGGCUcGCGCAgcgGAugUCGa-CGCc -3' miRNA: 3'- -UGGU----UCGA-CGCGUa--CUugAGCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 78231 | 0.66 | 0.980401 |
Target: 5'- aGCCGcagcaugucggugGGCaUGCGguUGAGgUCGUUcaCGCg -3' miRNA: 3'- -UGGU-------------UCG-ACGCguACUUgAGCAA--GCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 64767 | 0.66 | 0.986473 |
Target: 5'- gGCCuccGGCgagGCGUuccUGGACUUcgaGUUCGCc -3' miRNA: 3'- -UGGu--UCGa--CGCGu--ACUUGAG---CAAGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 41527 | 0.66 | 0.984698 |
Target: 5'- gGCCAuccGCU-CGCG-GAugUCGgUCGCg -3' miRNA: 3'- -UGGUu--CGAcGCGUaCUugAGCaAGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 101479 | 0.66 | 0.975791 |
Target: 5'- gACCAGGCgcagGCGCu---GCUCGcgcucaugCGCg -3' miRNA: 3'- -UGGUUCGa---CGCGuacuUGAGCaa------GCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 6824 | 0.66 | 0.975791 |
Target: 5'- -aCGAGCgUGCGCAUGAuggauucCUUGgccCGCg -3' miRNA: 3'- ugGUUCG-ACGCGUACUu------GAGCaa-GCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 42746 | 0.66 | 0.978307 |
Target: 5'- cGCCGAGCgugcgGUGCggGucccGCgCGUUCGUg -3' miRNA: 3'- -UGGUUCGa----CGCGuaCu---UGaGCAAGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 110130 | 0.66 | 0.986473 |
Target: 5'- aGCCAuGGCUGCGUGUGguuGugUUGggaaaggCGCa -3' miRNA: 3'- -UGGU-UCGACGCGUAC---UugAGCaa-----GCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 24839 | 0.66 | 0.975791 |
Target: 5'- uGCuCGAGCgGCGCGU--GCUCGaggacguggUCGCg -3' miRNA: 3'- -UG-GUUCGaCGCGUAcuUGAGCa--------AGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 133125 | 0.66 | 0.984698 |
Target: 5'- cAUCGAGCUGUGauccccgcgGAGCUgG-UCGCg -3' miRNA: 3'- -UGGUUCGACGCgua------CUUGAgCaAGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 1180 | 0.66 | 0.984698 |
Target: 5'- cGCUAGGCgGUGCGcGAGCgcggcaCGggCGCg -3' miRNA: 3'- -UGGUUCGaCGCGUaCUUGa-----GCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 84869 | 0.66 | 0.982752 |
Target: 5'- cUCAGGg-GCGCAUGuagcuuACUCGgcCGCg -3' miRNA: 3'- uGGUUCgaCGCGUACu-----UGAGCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 12988 | 0.66 | 0.982752 |
Target: 5'- -gCGAGCcgGCGUAUGu-CUCGgUCGUg -3' miRNA: 3'- ugGUUCGa-CGCGUACuuGAGCaAGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 125956 | 0.66 | 0.984698 |
Target: 5'- -gCGGGCgUGgGCGUGAACgcgCGgaacgCGCg -3' miRNA: 3'- ugGUUCG-ACgCGUACUUGa--GCaa---GCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 25270 | 0.66 | 0.975791 |
Target: 5'- cGCCAAcGCgGCGC-UGGAgUUCGcgCGCa -3' miRNA: 3'- -UGGUU-CGaCGCGuACUU-GAGCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 42831 | 0.66 | 0.986473 |
Target: 5'- gGCCAAccgcccGCUGCGCGUGGuggugaCGgaCGCc -3' miRNA: 3'- -UGGUU------CGACGCGUACUuga---GCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 60945 | 0.66 | 0.980624 |
Target: 5'- uGCCGcgccGGCaUGCGCAUGGGg-CGcgCGCc -3' miRNA: 3'- -UGGU----UCG-ACGCGUACUUgaGCaaGCG- -5' |
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25526 | 3' | -51.5 | NC_005337.1 | + | 65528 | 0.66 | 0.986473 |
Target: 5'- aACCu-GgUGCGCGUGcGCUCGaaagaggugaUCGCg -3' miRNA: 3'- -UGGuuCgACGCGUACuUGAGCa---------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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