miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 3' -51.5 NC_005337.1 + 91787 0.69 0.932981
Target:  5'- aGCUucagGAGCUcGCGCGUGAACggggggcgUCGUUgaaCGCg -3'
miRNA:   3'- -UGG----UUCGA-CGCGUACUUG--------AGCAA---GCG- -5'
25526 3' -51.5 NC_005337.1 + 62499 0.7 0.896713
Target:  5'- -aCAuGCUGUGCuUGGugUCGUcCGCg -3'
miRNA:   3'- ugGUuCGACGCGuACUugAGCAaGCG- -5'
25526 3' -51.5 NC_005337.1 + 100972 0.7 0.903402
Target:  5'- uCCAagcAGCUGCGCGUGGacauccugcaccACUCGaucuccacgCGCg -3'
miRNA:   3'- uGGU---UCGACGCGUACU------------UGAGCaa-------GCG- -5'
25526 3' -51.5 NC_005337.1 + 86396 0.69 0.907293
Target:  5'- cGCCAggcGGCUGCGCGcguccggcgcgaugUGGAuggcgucCUCGgUCGCg -3'
miRNA:   3'- -UGGU---UCGACGCGU--------------ACUU-------GAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 22951 0.69 0.921929
Target:  5'- cGCC-AGCUGgGCAcgcugGGGCUCGUccUCGa -3'
miRNA:   3'- -UGGuUCGACgCGUa----CUUGAGCA--AGCg -5'
25526 3' -51.5 NC_005337.1 + 14939 0.69 0.921929
Target:  5'- aGCCAGGCcuUGCGCAggaUGGcCUCG--CGCa -3'
miRNA:   3'- -UGGUUCG--ACGCGU---ACUuGAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 89345 0.69 0.921929
Target:  5'- -aCAGGUgGCGCAUGAGgUCGauggCGCc -3'
miRNA:   3'- ugGUUCGaCGCGUACUUgAGCaa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 70514 0.69 0.927585
Target:  5'- cACCAAGCUcGUGC-UGGACgugCGccacUCGCu -3'
miRNA:   3'- -UGGUUCGA-CGCGuACUUGa--GCa---AGCG- -5'
25526 3' -51.5 NC_005337.1 + 99400 0.69 0.932981
Target:  5'- uGCCGGuGCUGCGCAccgcGGGCggCGggUGCg -3'
miRNA:   3'- -UGGUU-CGACGCGUa---CUUGa-GCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 38848 0.7 0.882584
Target:  5'- uGCUAucGCUGCcccGCGUGAcGCUCGUgcgggCGCa -3'
miRNA:   3'- -UGGUu-CGACG---CGUACU-UGAGCAa----GCG- -5'
25526 3' -51.5 NC_005337.1 + 37229 0.7 0.882584
Target:  5'- cACgAAGaaGCGCAUGAGCaCGUccacgUCGCa -3'
miRNA:   3'- -UGgUUCgaCGCGUACUUGaGCA-----AGCG- -5'
25526 3' -51.5 NC_005337.1 + 81777 0.7 0.881852
Target:  5'- -gCAGGUUGCGCAUGGcgcgcaugagccgGCUC--UCGCg -3'
miRNA:   3'- ugGUUCGACGCGUACU-------------UGAGcaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 33712 0.75 0.622588
Target:  5'- gGCCcauggaaaucugaGGGCUGCGCAUGAAC-CGccggCGCa -3'
miRNA:   3'- -UGG-------------UUCGACGCGUACUUGaGCaa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 104923 0.73 0.739571
Target:  5'- cGCCGGuGCUcacGCGCAUGGACUCca-CGCa -3'
miRNA:   3'- -UGGUU-CGA---CGCGUACUUGAGcaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 97132 0.72 0.798458
Target:  5'- gGCgGAGCUGCGCGUGcccUUCG-UCGUc -3'
miRNA:   3'- -UGgUUCGACGCGUACuu-GAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 21941 0.71 0.834575
Target:  5'- cGCCGAGCUcGCggagucaucgGCGUGAACUaCGaccUCGCg -3'
miRNA:   3'- -UGGUUCGA-CG----------CGUACUUGA-GCa--AGCG- -5'
25526 3' -51.5 NC_005337.1 + 9653 0.71 0.851464
Target:  5'- uGCUGAGCagcccGCGCGUGAGCUCGguaaCGa -3'
miRNA:   3'- -UGGUUCGa----CGCGUACUUGAGCaa--GCg -5'
25526 3' -51.5 NC_005337.1 + 85185 0.71 0.851464
Target:  5'- cGCaCGAGCUGCGCgAUGGAggCGUUgGUc -3'
miRNA:   3'- -UG-GUUCGACGCG-UACUUgaGCAAgCG- -5'
25526 3' -51.5 NC_005337.1 + 52726 0.71 0.867486
Target:  5'- uGCgCGAGCUGCGCGccGAGCUgaaGcgCGCg -3'
miRNA:   3'- -UG-GUUCGACGCGUa-CUUGAg--CaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 97171 0.7 0.875153
Target:  5'- cGCCucggcgcuGCUGCGCuccggcGAGCUCGacCGCg -3'
miRNA:   3'- -UGGuu------CGACGCGua----CUUGAGCaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.