miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 3' -51.5 NC_005337.1 + 119289 1.11 0.004639
Target:  5'- cACCAAGCUGCGCAUGAACUCGUUCGCc -3'
miRNA:   3'- -UGGUUCGACGCGUACUUGAGCAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 24417 0.82 0.297668
Target:  5'- gGCCGGGCUGUGCGUGcacCUCaaGUUCGCg -3'
miRNA:   3'- -UGGUUCGACGCGUACuu-GAG--CAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 109177 0.78 0.48816
Target:  5'- cGCCGcGCcGCGCGggcgGAGCUCGgcgUCGCg -3'
miRNA:   3'- -UGGUuCGaCGCGUa---CUUGAGCa--AGCG- -5'
25526 3' -51.5 NC_005337.1 + 63005 0.76 0.612972
Target:  5'- cGCCAcGCgGCGCAUGAGCgCGUUgucgaCGCg -3'
miRNA:   3'- -UGGUuCGaCGCGUACUUGaGCAA-----GCG- -5'
25526 3' -51.5 NC_005337.1 + 33712 0.75 0.622588
Target:  5'- gGCCcauggaaaucugaGGGCUGCGCAUGAAC-CGccggCGCa -3'
miRNA:   3'- -UGG-------------UUCGACGCGUACUUGaGCaa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 104923 0.73 0.739571
Target:  5'- cGCCGGuGCUcacGCGCAUGGACUCca-CGCa -3'
miRNA:   3'- -UGGUU-CGA---CGCGUACUUGAGcaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 82120 0.73 0.749702
Target:  5'- aGCCGcGCUgGCGCAUGAGCgcgCGacaCGCg -3'
miRNA:   3'- -UGGUuCGA-CGCGUACUUGa--GCaa-GCG- -5'
25526 3' -51.5 NC_005337.1 + 69952 0.73 0.769616
Target:  5'- cCCgAAGCgGCGCAUGAACgCGUagaCGCg -3'
miRNA:   3'- uGG-UUCGaCGCGUACUUGaGCAa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 97132 0.72 0.798458
Target:  5'- gGCgGAGCUGCGCGUGcccUUCG-UCGUc -3'
miRNA:   3'- -UGgUUCGACGCGUACuu-GAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 116773 0.72 0.807757
Target:  5'- cGCCGGaacaacaagcGCUGCGUGUGcuacGGCUCGUacUCGCu -3'
miRNA:   3'- -UGGUU----------CGACGCGUAC----UUGAGCA--AGCG- -5'
25526 3' -51.5 NC_005337.1 + 12231 0.72 0.813254
Target:  5'- gGCCAGGCUGUGCAgcggcguguucucGAGCaUGUccgUCGCg -3'
miRNA:   3'- -UGGUUCGACGCGUa------------CUUGaGCA---AGCG- -5'
25526 3' -51.5 NC_005337.1 + 122974 0.72 0.816883
Target:  5'- cACCAAGCUGCugauCGUGGACgacaCcUUCGCg -3'
miRNA:   3'- -UGGUUCGACGc---GUACUUGa---GcAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 25080 0.71 0.834575
Target:  5'- gUCAAGCUGCGCGacgccGAGCUCcgcccgCGCg -3'
miRNA:   3'- uGGUUCGACGCGUa----CUUGAGcaa---GCG- -5'
25526 3' -51.5 NC_005337.1 + 21941 0.71 0.834575
Target:  5'- cGCCGAGCUcGCggagucaucgGCGUGAACUaCGaccUCGCg -3'
miRNA:   3'- -UGGUUCGA-CG----------CGUACUUGA-GCa--AGCG- -5'
25526 3' -51.5 NC_005337.1 + 132090 0.71 0.851464
Target:  5'- cACCGAGC-GCGuCGUGGACaCGcuggUCGCg -3'
miRNA:   3'- -UGGUUCGaCGC-GUACUUGaGCa---AGCG- -5'
25526 3' -51.5 NC_005337.1 + 85185 0.71 0.851464
Target:  5'- cGCaCGAGCUGCGCgAUGGAggCGUUgGUc -3'
miRNA:   3'- -UG-GUUCGACGCG-UACUUgaGCAAgCG- -5'
25526 3' -51.5 NC_005337.1 + 9653 0.71 0.851464
Target:  5'- uGCUGAGCagcccGCGCGUGAGCUCGguaaCGa -3'
miRNA:   3'- -UGGUUCGa----CGCGUACUUGAGCaa--GCg -5'
25526 3' -51.5 NC_005337.1 + 53936 0.71 0.85798
Target:  5'- gGCCAucggggaguucuGCUcGCGCcuGUGccgcGACUCGUUCGCg -3'
miRNA:   3'- -UGGUu-----------CGA-CGCG--UAC----UUGAGCAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 5877 0.71 0.859587
Target:  5'- gGCgaGAGCgGCcgccaGCAUGGACUCGUcgugUCGCg -3'
miRNA:   3'- -UGg-UUCGaCG-----CGUACUUGAGCA----AGCG- -5'
25526 3' -51.5 NC_005337.1 + 52726 0.71 0.867486
Target:  5'- uGCgCGAGCUGCGCGccGAGCUgaaGcgCGCg -3'
miRNA:   3'- -UG-GUUCGACGCGUa-CUUGAg--CaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.