miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 3' -51.5 NC_005337.1 + 1180 0.66 0.984698
Target:  5'- cGCUAGGCgGUGCGcGAGCgcggcaCGggCGCg -3'
miRNA:   3'- -UGGUUCGaCGCGUaCUUGa-----GCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 2071 0.68 0.956087
Target:  5'- uGCCGcagcAGCagGCGCAcGGugUCGgcgCGCg -3'
miRNA:   3'- -UGGU----UCGa-CGCGUaCUugAGCaa-GCG- -5'
25526 3' -51.5 NC_005337.1 + 2938 0.67 0.966969
Target:  5'- uGCCGAcGCgcacggcGCGCAUGAGCgCGgucuccgccUCGCa -3'
miRNA:   3'- -UGGUU-CGa------CGCGUACUUGaGCa--------AGCG- -5'
25526 3' -51.5 NC_005337.1 + 3189 0.67 0.970129
Target:  5'- gGCC-AGC-GCGCAgaccacGAACUCGcgcucgUCGCc -3'
miRNA:   3'- -UGGuUCGaCGCGUa-----CUUGAGCa-----AGCG- -5'
25526 3' -51.5 NC_005337.1 + 3872 0.67 0.970129
Target:  5'- cACC-GGCcGCGCAUGAGCgucuugaGgaCGCg -3'
miRNA:   3'- -UGGuUCGaCGCGUACUUGag-----CaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 5514 0.67 0.970129
Target:  5'- uACCAGGUUcGCGCGccggcgGAGCUCuGUcacgCGCu -3'
miRNA:   3'- -UGGUUCGA-CGCGUa-----CUUGAG-CAa---GCG- -5'
25526 3' -51.5 NC_005337.1 + 5877 0.71 0.859587
Target:  5'- gGCgaGAGCgGCcgccaGCAUGGACUCGUcgugUCGCg -3'
miRNA:   3'- -UGg-UUCGaCG-----CGUACUUGAGCA----AGCG- -5'
25526 3' -51.5 NC_005337.1 + 6116 0.66 0.984698
Target:  5'- gGCCAcgugcagcGGCgUGCGUccGAGCgCGUuUCGCg -3'
miRNA:   3'- -UGGU--------UCG-ACGCGuaCUUGaGCA-AGCG- -5'
25526 3' -51.5 NC_005337.1 + 6824 0.66 0.975791
Target:  5'- -aCGAGCgUGCGCAUGAuggauucCUUGgccCGCg -3'
miRNA:   3'- ugGUUCG-ACGCGUACUu------GAGCaa-GCG- -5'
25526 3' -51.5 NC_005337.1 + 8388 0.7 0.875153
Target:  5'- gGCCAGGCUGUGCAgc-AC-CGUguugUGCa -3'
miRNA:   3'- -UGGUUCGACGCGUacuUGaGCAa---GCG- -5'
25526 3' -51.5 NC_005337.1 + 9330 0.66 0.980624
Target:  5'- aGCCGAGCUGCGUccggagGGACUgcugUCGg -3'
miRNA:   3'- -UGGUUCGACGCGua----CUUGAgca-AGCg -5'
25526 3' -51.5 NC_005337.1 + 9653 0.71 0.851464
Target:  5'- uGCUGAGCagcccGCGCGUGAGCUCGguaaCGa -3'
miRNA:   3'- -UGGUUCGa----CGCGUACUUGAGCaa--GCg -5'
25526 3' -51.5 NC_005337.1 + 11521 0.67 0.970129
Target:  5'- cGCCGGGCaGCGCA-GggUggccgccaggUCGUcCGCg -3'
miRNA:   3'- -UGGUUCGaCGCGUaCuuG----------AGCAaGCG- -5'
25526 3' -51.5 NC_005337.1 + 12231 0.72 0.813254
Target:  5'- gGCCAGGCUGUGCAgcggcguguucucGAGCaUGUccgUCGCg -3'
miRNA:   3'- -UGGUUCGACGCGUa------------CUUGaGCA---AGCG- -5'
25526 3' -51.5 NC_005337.1 + 12292 0.67 0.966969
Target:  5'- cGCagGAGCUcGCGCAcGAugUCcgcGUUCGCc -3'
miRNA:   3'- -UGg-UUCGA-CGCGUaCUugAG---CAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 12988 0.66 0.982752
Target:  5'- -gCGAGCcgGCGUAUGu-CUCGgUCGUg -3'
miRNA:   3'- ugGUUCGa-CGCGUACuuGAGCaAGCG- -5'
25526 3' -51.5 NC_005337.1 + 14469 0.71 0.867486
Target:  5'- cACCcuGCUGUGUAUGugUUCGUUCa- -3'
miRNA:   3'- -UGGuuCGACGCGUACuuGAGCAAGcg -5'
25526 3' -51.5 NC_005337.1 + 14939 0.69 0.921929
Target:  5'- aGCCAGGCcuUGCGCAggaUGGcCUCG--CGCa -3'
miRNA:   3'- -UGGUUCG--ACGCGU---ACUuGAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 21941 0.71 0.834575
Target:  5'- cGCCGAGCUcGCggagucaucgGCGUGAACUaCGaccUCGCg -3'
miRNA:   3'- -UGGUUCGA-CG----------CGUACUUGA-GCa--AGCG- -5'
25526 3' -51.5 NC_005337.1 + 22951 0.69 0.921929
Target:  5'- cGCC-AGCUGgGCAcgcugGGGCUCGUccUCGa -3'
miRNA:   3'- -UGGuUCGACgCGUa----CUUGAGCA--AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.