miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 133583 0.71 0.363991
Target:  5'- cGCGCGAGcuucGCC-UCCgcGCGCAAgGGCCc -3'
miRNA:   3'- -CGCGCUC----CGGuAGGa-CGCGUU-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 133583 0.71 0.363991
Target:  5'- cGCGCGAGcuucGCC-UCCgcGCGCAAgGGCCc -3'
miRNA:   3'- -CGCGCUC----CGGuAGGa-CGCGUU-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 133011 0.7 0.448713
Target:  5'- cCGCG-GGCCAUCCUGCgGCugaucGCCc -3'
miRNA:   3'- cGCGCuCCGGUAGGACG-CGuuc--CGGa -5'
25526 5' -60.5 NC_005337.1 + 132957 0.66 0.683627
Target:  5'- aGCGCGcuGGaCC-UCCUGCGCc--GCCg -3'
miRNA:   3'- -CGCGCu-CC-GGuAGGACGCGuucCGGa -5'
25526 5' -60.5 NC_005337.1 + 132047 0.67 0.613118
Target:  5'- uCGCGcGGU--UCCUGCGCGcgcucgcggcccGGGCCg -3'
miRNA:   3'- cGCGCuCCGguAGGACGCGU------------UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 131394 0.69 0.494957
Target:  5'- cCGCGGGGCCGUgaucguguucCCgcugGCGCGcGGCUc -3'
miRNA:   3'- cGCGCUCCGGUA----------GGa---CGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 131158 0.68 0.542266
Target:  5'- aCGCGAGGCCggCCgcgGuCGCGGucgcggagucgcuGGCCg -3'
miRNA:   3'- cGCGCUCCGGuaGGa--C-GCGUU-------------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 131081 0.7 0.422139
Target:  5'- aGCGCGAGuuCGUggUCUGCGCGcuGGCCa -3'
miRNA:   3'- -CGCGCUCcgGUA--GGACGCGUu-CCGGa -5'
25526 5' -60.5 NC_005337.1 + 130660 0.67 0.603041
Target:  5'- cGCGCGAGGgaCGUCUacgGCGCuacGCCg -3'
miRNA:   3'- -CGCGCUCCg-GUAGGa--CGCGuucCGGa -5'
25526 5' -60.5 NC_005337.1 + 130514 0.67 0.592984
Target:  5'- cGUGgGAGGUCAuggaguUCCUggugcGCGCGGGcGCCa -3'
miRNA:   3'- -CGCgCUCCGGU------AGGA-----CGCGUUC-CGGa -5'
25526 5' -60.5 NC_005337.1 + 127954 0.71 0.38003
Target:  5'- aGUGCGAGGCgGagaUCCgcgccaUGCGCGAGGUg- -3'
miRNA:   3'- -CGCGCUCCGgU---AGG------ACGCGUUCCGga -5'
25526 5' -60.5 NC_005337.1 + 127888 0.7 0.422139
Target:  5'- cGCGCGGcGCCggCgaGCGCGugcGGGCCg -3'
miRNA:   3'- -CGCGCUcCGGuaGgaCGCGU---UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 126218 0.68 0.553102
Target:  5'- cGCGCGAGugcgugauggaGCUGgcCCUcCGCAAGGCCg -3'
miRNA:   3'- -CGCGCUC-----------CGGUa-GGAcGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 124776 0.7 0.422139
Target:  5'- -gGUGAcGGCCAUCgagcuCUGCGCGcagauGGGCCg -3'
miRNA:   3'- cgCGCU-CCGGUAG-----GACGCGU-----UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 124540 0.75 0.218102
Target:  5'- cGCGCGcugcuucAGGCUcUCCuccccgcUGCGCGAGGCCg -3'
miRNA:   3'- -CGCGC-------UCCGGuAGG-------ACGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 124413 0.7 0.422139
Target:  5'- uGCGCGAGaUgGUCCUGgGCAAcGCCg -3'
miRNA:   3'- -CGCGCUCcGgUAGGACgCGUUcCGGa -5'
25526 5' -60.5 NC_005337.1 + 123654 0.73 0.277858
Target:  5'- gGCGCGAcGGUCGUCCUG-GCGccGCCg -3'
miRNA:   3'- -CGCGCU-CCGGUAGGACgCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 122390 0.81 0.08797
Target:  5'- uGCGCGAGGUCGUgCUGCGCGGcGGCg- -3'
miRNA:   3'- -CGCGCUCCGGUAgGACGCGUU-CCGga -5'
25526 5' -60.5 NC_005337.1 + 120983 0.71 0.396535
Target:  5'- cUGCGAGcccGCCcUCCUGCGCAucGCCc -3'
miRNA:   3'- cGCGCUC---CGGuAGGACGCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 119330 1.09 0.000842
Target:  5'- uGCGCGAGGCCAUCCUGCGCAAGGCCUg -3'
miRNA:   3'- -CGCGCUCCGGUAGGACGCGUUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.