miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 119229 1.15 0.001937
Target:  5'- uGGCUUUGCCAUGGACUCGGAGAUGCCg -3'
miRNA:   3'- -CCGAAACGGUACCUGAGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 88754 0.66 0.954594
Target:  5'- cGGCUcccgacGCCGaGGACcCGGAGgcGCa -3'
miRNA:   3'- -CCGAaa----CGGUaCCUGaGCCUCuaCGg -5'
25527 5' -53 NC_005337.1 + 119554 0.66 0.962146
Target:  5'- cGGCUg-GCgAUGGGCgucgUGGAGA-GCa -3'
miRNA:   3'- -CCGAaaCGgUACCUGa---GCCUCUaCGg -5'
25527 5' -53 NC_005337.1 + 87803 0.66 0.971763
Target:  5'- cGGCUgcUGCCcgGGAgCUCGcGGcgcGCCg -3'
miRNA:   3'- -CCGAa-ACGGuaCCU-GAGCcUCua-CGG- -5'
25527 5' -53 NC_005337.1 + 118497 0.7 0.837497
Target:  5'- cGGCggUGaCCGUGcgggugaccggcgucGugUCGGcGGAUGCCa -3'
miRNA:   3'- -CCGaaAC-GGUAC---------------CugAGCC-UCUACGG- -5'
25527 5' -53 NC_005337.1 + 63327 0.7 0.850743
Target:  5'- aGGCgcUUGCuCGUGGACUuucCGGucauGGUGUCg -3'
miRNA:   3'- -CCGa-AACG-GUACCUGA---GCCu---CUACGG- -5'
25527 5' -53 NC_005337.1 + 64493 0.69 0.895433
Target:  5'- uGCUcgGCCGUGGACcgcgucaCGGuGAaGCCc -3'
miRNA:   3'- cCGAaaCGGUACCUGa------GCCuCUaCGG- -5'
25527 5' -53 NC_005337.1 + 118602 0.68 0.914572
Target:  5'- aGGCcuccGUCGUGGACU-GGAGGaucGCCg -3'
miRNA:   3'- -CCGaaa-CGGUACCUGAgCCUCUa--CGG- -5'
25527 5' -53 NC_005337.1 + 4385 0.68 0.926082
Target:  5'- cGGCc--GCCAUGuGCagCGGcgAGAUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACcUGa-GCC--UCUACGG- -5'
25527 5' -53 NC_005337.1 + 117183 0.66 0.954594
Target:  5'- cGCguucGCCAUGGAagagcUGGAG-UGCCg -3'
miRNA:   3'- cCGaaa-CGGUACCUga---GCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 105528 0.67 0.931459
Target:  5'- cGGCc--GCCAUGGACgcgacuggaaCGGuGgcGCCa -3'
miRNA:   3'- -CCGaaaCGGUACCUGa---------GCCuCuaCGG- -5'
25527 5' -53 NC_005337.1 + 88074 0.68 0.922735
Target:  5'- cGGCgagcucaugcagGCCGUGGACaUGGuGGAcGCCg -3'
miRNA:   3'- -CCGaaa---------CGGUACCUGaGCC-UCUaCGG- -5'
25527 5' -53 NC_005337.1 + 98068 0.78 0.399967
Target:  5'- cGCUcaUGcCCGUGGuCUCGGAGAUGCa -3'
miRNA:   3'- cCGAa-AC-GGUACCuGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 88263 0.67 0.941458
Target:  5'- cGGCgc-GCCGgcGGGCgccgCGGAGGacaugGCCg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa---GCCUCUa----CGG- -5'
25527 5' -53 NC_005337.1 + 107162 0.72 0.74071
Target:  5'- cGCgugGCCAaGcGGCUgcUGGAGAUGCCg -3'
miRNA:   3'- cCGaaaCGGUaC-CUGA--GCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 51970 0.68 0.920453
Target:  5'- cGCUcggUGCCcuaccuggugGUGGACUCcaGGAaGAUGCUc -3'
miRNA:   3'- cCGAa--ACGG----------UACCUGAG--CCU-CUACGG- -5'
25527 5' -53 NC_005337.1 + 29025 0.67 0.95046
Target:  5'- cGGCcccaaGCCGUGGuggUGGGGgcGCCa -3'
miRNA:   3'- -CCGaaa--CGGUACCugaGCCUCuaCGG- -5'
25527 5' -53 NC_005337.1 + 107021 0.66 0.958487
Target:  5'- cGGUUcacGCuCAcGaACUCGGAGAUGCUg -3'
miRNA:   3'- -CCGAaa-CG-GUaCcUGAGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 68559 0.72 0.750662
Target:  5'- cGCUUUcGCCAUGG-CgCGGAGcucgGCCa -3'
miRNA:   3'- cCGAAA-CGGUACCuGaGCCUCua--CGG- -5'
25527 5' -53 NC_005337.1 + 42283 0.69 0.881456
Target:  5'- gGGCUggagaaGCuCAUGGGCgacgaggagaCGGAGGUGaCCg -3'
miRNA:   3'- -CCGAaa----CG-GUACCUGa---------GCCUCUAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.