Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25529 | 5' | -57.4 | NC_005337.1 | + | 75854 | 0.66 | 0.869885 |
Target: 5'- gUCUCGCCGcUCcggaaGAGCUucGUGG-CGGCc -3' miRNA: 3'- -GGAGCGGCaAG-----UUCGGc-CACCuGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 125941 | 0.66 | 0.854962 |
Target: 5'- gCCcCGCUGcUCGAGgCGG-GcGugGGCg -3' miRNA: 3'- -GGaGCGGCaAGUUCgGCCaC-CugCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 57522 | 0.66 | 0.876334 |
Target: 5'- gCUUCGUcuccuucaaCGUUCuggucaaggagugGGGCagcgacaugaCGGUGGACGGCg -3' miRNA: 3'- -GGAGCG---------GCAAG-------------UUCG----------GCCACCUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 84712 | 0.66 | 0.869885 |
Target: 5'- cCCggCGCUGgacaaCGAGCUgaaGGUGGugGuGCg -3' miRNA: 3'- -GGa-GCGGCaa---GUUCGG---CCACCugC-CG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 129579 | 0.66 | 0.869159 |
Target: 5'- cCCUgGCCGUgcugcUCAAGuCCGcgcgagcgaccGUGGAgcucgucCGGCg -3' miRNA: 3'- -GGAgCGGCA-----AGUUC-GGC-----------CACCU-------GCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 61063 | 0.66 | 0.877041 |
Target: 5'- uCCg-GCCGauggugUUGAGCCGGUGcagcuCGGCg -3' miRNA: 3'- -GGagCGGCa-----AGUUCGGCCACcu---GCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 22605 | 0.66 | 0.836029 |
Target: 5'- --cCGCCGUggacccggacuucuUCGAGCCGGcgcGGAuccgcgaggccuuCGGCg -3' miRNA: 3'- ggaGCGGCA--------------AGUUCGGCCa--CCU-------------GCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 18854 | 0.66 | 0.839258 |
Target: 5'- aCUC-CCGgac-GGCCGGcGaGACGGCg -3' miRNA: 3'- gGAGcGGCaaguUCGGCCaC-CUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 33184 | 0.66 | 0.839258 |
Target: 5'- cCCgCGCCGgaCGGGCCcucccGACGGCg -3' miRNA: 3'- -GGaGCGGCaaGUUCGGccac-CUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 29543 | 0.66 | 0.877041 |
Target: 5'- aUCUCGCCGaUCuugaugccGCCGccGcGGCGGCg -3' miRNA: 3'- -GGAGCGGCaAGuu------CGGCcaC-CUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 88560 | 0.66 | 0.869885 |
Target: 5'- -aUCGCCacgcuggCGGGCCGGgGGuucCGGCu -3' miRNA: 3'- ggAGCGGcaa----GUUCGGCCaCCu--GCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 60252 | 0.66 | 0.854962 |
Target: 5'- ---aGCCGgagUCgGAGCCGGagucgGGGCaGGCg -3' miRNA: 3'- ggagCGGCa--AG-UUCGGCCa----CCUG-CCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 98589 | 0.66 | 0.847205 |
Target: 5'- gCUCGCC-----AGCCGGUcgaaGGCGGCc -3' miRNA: 3'- gGAGCGGcaaguUCGGCCAc---CUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 93972 | 0.66 | 0.842459 |
Target: 5'- gCCUUGCCGccaucgcccUCGGGCgaggaggucaccagaCGGUGGAaGGCc -3' miRNA: 3'- -GGAGCGGCa--------AGUUCG---------------GCCACCUgCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 34675 | 0.66 | 0.839258 |
Target: 5'- cUCUCGCCGUcCAGGCCcagcacGGUcagcgugcacucGcGCGGCa -3' miRNA: 3'- -GGAGCGGCAaGUUCGG------CCA------------CcUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 132097 | 0.66 | 0.847205 |
Target: 5'- gCCUgCGCCGUgcgcgUCGGcGCCG-UGcGCGGCa -3' miRNA: 3'- -GGA-GCGGCA-----AGUU-CGGCcACcUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 44464 | 0.66 | 0.862524 |
Target: 5'- gCCUCGCCGagCuggAGGCCaGUucgaGGcGCGGCc -3' miRNA: 3'- -GGAGCGGCaaG---UUCGGcCA----CC-UGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 1351 | 0.66 | 0.869885 |
Target: 5'- -gUCGCCGa--AGGUgaCGGUccugaGGACGGCg -3' miRNA: 3'- ggAGCGGCaagUUCG--GCCA-----CCUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 36525 | 0.66 | 0.869885 |
Target: 5'- uCCUgaaCGCCG--CGGGCguccccggCGGcUGGGCGGCg -3' miRNA: 3'- -GGA---GCGGCaaGUUCG--------GCC-ACCUGCCG- -5' |
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25529 | 5' | -57.4 | NC_005337.1 | + | 78297 | 0.66 | 0.877041 |
Target: 5'- --gCGCCGUacucCAGGCUGG-GGAggUGGCc -3' miRNA: 3'- ggaGCGGCAa---GUUCGGCCaCCU--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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