miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 1351 0.66 0.869885
Target:  5'- -gUCGCCGa--AGGUgaCGGUccugaGGACGGCg -3'
miRNA:   3'- ggAGCGGCaagUUCG--GCCA-----CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 1874 0.67 0.805726
Target:  5'- uCCUCGaaGaucgCGGGCCGG-GGcCGGUa -3'
miRNA:   3'- -GGAGCggCaa--GUUCGGCCaCCuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 1970 0.66 0.847205
Target:  5'- cCCUccgcCGCCGUgCAcGCCGGgucGGcgucagcuGCGGCu -3'
miRNA:   3'- -GGA----GCGGCAaGUuCGGCCa--CC--------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 5854 0.69 0.722212
Target:  5'- aCCUCGCUGgcCugcGGCUGcGUGGcgagaGCGGCc -3'
miRNA:   3'- -GGAGCGGCaaGu--UCGGC-CACC-----UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 6945 0.68 0.769765
Target:  5'- gCUCGUCGUUCAcuCCcGUGGAgcuuagcagcaCGGCc -3'
miRNA:   3'- gGAGCGGCAAGUucGGcCACCU-----------GCCG- -5'
25529 5' -57.4 NC_005337.1 + 7027 0.69 0.702606
Target:  5'- gCCUCcagcaucagGCCGagCAcGUCGGggcGGGCGGCg -3'
miRNA:   3'- -GGAG---------CGGCaaGUuCGGCCa--CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 7397 0.67 0.796943
Target:  5'- uCCUCGCCa--CGAGCacgcagaGGUGcaGCGGCg -3'
miRNA:   3'- -GGAGCGGcaaGUUCGg------CCACc-UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 10447 0.7 0.64268
Target:  5'- --aCGCCGggacgGAGCCGcccaggaacacGUGGGCGGCg -3'
miRNA:   3'- ggaGCGGCaag--UUCGGC-----------CACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 10871 0.69 0.699644
Target:  5'- gCUCGCCGagCGGGCgagcaccacgugugCGG-GGACGGg -3'
miRNA:   3'- gGAGCGGCaaGUUCG--------------GCCaCCUGCCg -5'
25529 5' -57.4 NC_005337.1 + 12867 0.69 0.68277
Target:  5'- -gUCGCCGgg-GAGCCGcaaguagacGUGGAgCGGCg -3'
miRNA:   3'- ggAGCGGCaagUUCGGC---------CACCU-GCCG- -5'
25529 5' -57.4 NC_005337.1 + 13295 0.68 0.731908
Target:  5'- gUUCGCCGgacccaagCAGuGCCGGUGGuacccgUGGCc -3'
miRNA:   3'- gGAGCGGCaa------GUU-CGGCCACCu-----GCCG- -5'
25529 5' -57.4 NC_005337.1 + 14809 0.66 0.877041
Target:  5'- uUCUCGUgCGUgagCGAggacGCC-GUGGugGGCg -3'
miRNA:   3'- -GGAGCG-GCAa--GUU----CGGcCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 18854 0.66 0.839258
Target:  5'- aCUC-CCGgac-GGCCGGcGaGACGGCg -3'
miRNA:   3'- gGAGcGGCaaguUCGGCCaC-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 22605 0.66 0.836029
Target:  5'- --cCGCCGUggacccggacuucuUCGAGCCGGcgcGGAuccgcgaggccuuCGGCg -3'
miRNA:   3'- ggaGCGGCA--------------AGUUCGGCCa--CCU-------------GCCG- -5'
25529 5' -57.4 NC_005337.1 + 24610 0.67 0.809197
Target:  5'- gCCUUcgGCgCGggCAcggaggugacggaaaAGCUGGUGGACGcGCu -3'
miRNA:   3'- -GGAG--CG-GCaaGU---------------UCGGCCACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 24830 0.7 0.626579
Target:  5'- uCCUCGCCGUgcUCGAGCgGcgcgugcucgaggacGUGGuCGcGCa -3'
miRNA:   3'- -GGAGCGGCA--AGUUCGgC---------------CACCuGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 24875 0.67 0.814357
Target:  5'- --aCGCCGU----GUCuGUGGACGGCa -3'
miRNA:   3'- ggaGCGGCAaguuCGGcCACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 28712 0.68 0.731908
Target:  5'- uCCUCGggguCCGUgugCGuccugccccAGCgGGUGGACGcGCu -3'
miRNA:   3'- -GGAGC----GGCAa--GU---------UCGgCCACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 29543 0.66 0.877041
Target:  5'- aUCUCGCCGaUCuugaugccGCCGccGcGGCGGCg -3'
miRNA:   3'- -GGAGCGGCaAGuu------CGGCcaC-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 33184 0.66 0.839258
Target:  5'- cCCgCGCCGgaCGGGCCcucccGACGGCg -3'
miRNA:   3'- -GGaGCGGCaaGUUCGGccac-CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.