miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 43825 0.68 0.751038
Target:  5'- aCCUCcacGCUGcagCGGGCCGGcGGcGCGGUg -3'
miRNA:   3'- -GGAG---CGGCaa-GUUCGGCCaCC-UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 68334 0.7 0.672788
Target:  5'- --aCGCgCGUgccCGuGCCGGaGGACGGCg -3'
miRNA:   3'- ggaGCG-GCAa--GUuCGGCCaCCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 130089 0.69 0.691721
Target:  5'- gCagGCCGUUgAGGCCGG-GGucagcgacgcaucACGGCu -3'
miRNA:   3'- gGagCGGCAAgUUCGGCCaCC-------------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 90102 0.69 0.692713
Target:  5'- cUCUCGCCGgUCAgcuGGUCGGUGucGAUgaGGCu -3'
miRNA:   3'- -GGAGCGGCaAGU---UCGGCCAC--CUG--CCG- -5'
25529 5' -57.4 NC_005337.1 + 7027 0.69 0.702606
Target:  5'- gCCUCcagcaucagGCCGagCAcGUCGGggcGGGCGGCg -3'
miRNA:   3'- -GGAG---------CGGCaaGUuCGGCCa--CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 38685 0.69 0.722212
Target:  5'- --aCGCUGUUCGccGCCuGGUGucGGCGGCg -3'
miRNA:   3'- ggaGCGGCAAGUu-CGG-CCAC--CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 13295 0.68 0.731908
Target:  5'- gUUCGCCGgacccaagCAGuGCCGGUGGuacccgUGGCc -3'
miRNA:   3'- gGAGCGGCaa------GUU-CGGCCACCu-----GCCG- -5'
25529 5' -57.4 NC_005337.1 + 83921 0.68 0.731908
Target:  5'- gCCU-GCUGgccCAGGCuCGGccGGGCGGCg -3'
miRNA:   3'- -GGAgCGGCaa-GUUCG-GCCa-CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 40860 0.68 0.751038
Target:  5'- gCgUCGCCGUgccc-CCGGUgcagaGGGCGGCc -3'
miRNA:   3'- -GgAGCGGCAaguucGGCCA-----CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 120559 0.7 0.672788
Target:  5'- uCCUCGCgG----AGCuCGGUGGuguGCGGCa -3'
miRNA:   3'- -GGAGCGgCaaguUCG-GCCACC---UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 133435 0.7 0.640668
Target:  5'- gCC-CGCCGccuucgUCGAGcCCGGgcccgcgcgcgcGGACGGCu -3'
miRNA:   3'- -GGaGCGGCa-----AGUUC-GGCCa-----------CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 88274 0.7 0.632618
Target:  5'- gCCggUGCCGgaCAuGUCGGUGGA-GGCg -3'
miRNA:   3'- -GGa-GCGGCaaGUuCGGCCACCUgCCG- -5'
25529 5' -57.4 NC_005337.1 + 37677 0.75 0.380234
Target:  5'- aCCUUGCUGUUCAcGcCCGuGUGGACGcccGCg -3'
miRNA:   3'- -GGAGCGGCAAGUuC-GGC-CACCUGC---CG- -5'
25529 5' -57.4 NC_005337.1 + 51198 0.75 0.388403
Target:  5'- gCUaCGCCGgaCugcAGCUGGUGGACGuGCa -3'
miRNA:   3'- gGA-GCGGCaaGu--UCGGCCACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 129832 0.73 0.494768
Target:  5'- aUUCGcCCGUUCAuagaGGCUGGUGu-CGGCg -3'
miRNA:   3'- gGAGC-GGCAAGU----UCGGCCACcuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 45527 0.72 0.533123
Target:  5'- uCCUCGgCGUcggGAGCCGGUgcuGGAguCGGCg -3'
miRNA:   3'- -GGAGCgGCAag-UUCGGCCA---CCU--GCCG- -5'
25529 5' -57.4 NC_005337.1 + 85051 0.72 0.549749
Target:  5'- aCUCGCCGgccagCAGGuccuuguacagcguCCGGUGGuuGGCc -3'
miRNA:   3'- gGAGCGGCaa---GUUC--------------GGCCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 69244 0.71 0.56257
Target:  5'- gCCUggacgUGCCGgugacGCUGGUGGugGGCu -3'
miRNA:   3'- -GGA-----GCGGCaaguuCGGCCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 108948 0.71 0.572487
Target:  5'- aCCUCGUCGUUgGGgucguacacgcGCCGGUcGACGcGCg -3'
miRNA:   3'- -GGAGCGGCAAgUU-----------CGGCCAcCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 54241 0.71 0.602457
Target:  5'- uCCUCGuCCGgcgcgucCGGGCCGG-GuGCGGCg -3'
miRNA:   3'- -GGAGC-GGCaa-----GUUCGGCCaCcUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.