miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 118715 1.14 0.001102
Target:  5'- gCCUCGCCGUUCAAGCCGGUGGACGGCa -3'
miRNA:   3'- -GGAGCGGCAAGUUCGGCCACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 110323 0.77 0.29145
Target:  5'- --gCGCCGUUCGGcCCGGccGGGCGGCg -3'
miRNA:   3'- ggaGCGGCAAGUUcGGCCa-CCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 37677 0.75 0.380234
Target:  5'- aCCUUGCUGUUCAcGcCCGuGUGGACGcccGCg -3'
miRNA:   3'- -GGAGCGGCAAGUuC-GGC-CACCUGC---CG- -5'
25529 5' -57.4 NC_005337.1 + 51198 0.75 0.388403
Target:  5'- gCUaCGCCGgaCugcAGCUGGUGGACGuGCa -3'
miRNA:   3'- gGA-GCGGCaaGu--UCGGCCACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 39263 0.74 0.43093
Target:  5'- uCC-CGCCGUUCGcgguGGCCGcGcUGGcgGCGGCg -3'
miRNA:   3'- -GGaGCGGCAAGU----UCGGC-C-ACC--UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 99403 0.73 0.457719
Target:  5'- gCUCGUagaGUUCAcGUCGGaGGAUGGCg -3'
miRNA:   3'- gGAGCGg--CAAGUuCGGCCaCCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 129832 0.73 0.494768
Target:  5'- aUUCGcCCGUUCAuagaGGCUGGUGu-CGGCg -3'
miRNA:   3'- gGAGC-GGCAAGU----UCGGCCACcuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 45527 0.72 0.533123
Target:  5'- uCCUCGgCGUcggGAGCCGGUgcuGGAguCGGCg -3'
miRNA:   3'- -GGAGCgGCAag-UUCGGCCA---CCU--GCCG- -5'
25529 5' -57.4 NC_005337.1 + 85051 0.72 0.549749
Target:  5'- aCUCGCCGgccagCAGGuccuuguacagcguCCGGUGGuuGGCc -3'
miRNA:   3'- gGAGCGGCaa---GUUC--------------GGCCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 38754 0.71 0.56257
Target:  5'- aCCUgGUCauggCGAGCCGGUGcGCGGUg -3'
miRNA:   3'- -GGAgCGGcaa-GUUCGGCCACcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 69244 0.71 0.56257
Target:  5'- gCCUggacgUGCCGgugacGCUGGUGGugGGCu -3'
miRNA:   3'- -GGA-----GCGGCaaguuCGGCCACCugCCG- -5'
25529 5' -57.4 NC_005337.1 + 108948 0.71 0.572487
Target:  5'- aCCUCGUCGUUgGGgucguacacgcGCCGGUcGACGcGCg -3'
miRNA:   3'- -GGAGCGGCAAgUU-----------CGGCCAcCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 83973 0.71 0.582444
Target:  5'- --aCGgCGUUCAcGCCGGUGGuggucuccAUGGCg -3'
miRNA:   3'- ggaGCgGCAAGUuCGGCCACC--------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 54241 0.71 0.602457
Target:  5'- uCCUCGuCCGgcgcgucCGGGCCGG-GuGCGGCg -3'
miRNA:   3'- -GGAGC-GGCaa-----GUUCGGCCaCcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 89889 0.71 0.611494
Target:  5'- --cCGCCa--CAGGCCccaucccGGUGGGCGGCg -3'
miRNA:   3'- ggaGCGGcaaGUUCGG-------CCACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 82600 0.7 0.622555
Target:  5'- gCCUCGCCGU--AGGCguccaGGgGcGACGGCg -3'
miRNA:   3'- -GGAGCGGCAagUUCGg----CCaC-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 24830 0.7 0.626579
Target:  5'- uCCUCGCCGUgcUCGAGCgGcgcgugcucgaggacGUGGuCGcGCa -3'
miRNA:   3'- -GGAGCGGCA--AGUUCGgC---------------CACCuGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 111536 0.7 0.632618
Target:  5'- gCUcCGCCGcgugCAGGUCGG-GGuCGGCg -3'
miRNA:   3'- gGA-GCGGCaa--GUUCGGCCaCCuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 88274 0.7 0.632618
Target:  5'- gCCggUGCCGgaCAuGUCGGUGGA-GGCg -3'
miRNA:   3'- -GGa-GCGGCaaGUuCGGCCACCUgCCG- -5'
25529 5' -57.4 NC_005337.1 + 133435 0.7 0.640668
Target:  5'- gCC-CGCCGccuucgUCGAGcCCGGgcccgcgcgcgcGGACGGCu -3'
miRNA:   3'- -GGaGCGGCa-----AGUUC-GGCCa-----------CCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.