miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25530 5' -57 NC_005337.1 + 46013 0.66 0.858201
Target:  5'- cCGCGGCGcccgCCGGCGCGcCG-GCa--- -3'
miRNA:   3'- -GUGCUGCa---GGCCGUGCaGCaCGacaa -5'
25530 5' -57 NC_005337.1 + 77143 0.66 0.850378
Target:  5'- cCACGGCGUCCaGGCugG-CG-GCg--- -3'
miRNA:   3'- -GUGCUGCAGG-CCGugCaGCaCGacaa -5'
25530 5' -57 NC_005337.1 + 34570 0.66 0.850378
Target:  5'- cCGCGACGauggCCGcgcgcaGCGCGUCGaaGCUGUc -3'
miRNA:   3'- -GUGCUGCa---GGC------CGUGCAGCa-CGACAa -5'
25530 5' -57 NC_005337.1 + 86226 0.66 0.850378
Target:  5'- gCACGGCGUCUauccGCGCGUCGUucgccGCcGUg -3'
miRNA:   3'- -GUGCUGCAGGc---CGUGCAGCA-----CGaCAa -5'
25530 5' -57 NC_005337.1 + 112585 0.66 0.834143
Target:  5'- cCACGGCGUgCGGaaACGUCGUGaccagGUa -3'
miRNA:   3'- -GUGCUGCAgGCCg-UGCAGCACga---CAa -5'
25530 5' -57 NC_005337.1 + 1884 0.66 0.834143
Target:  5'- uCGCGGgcCGgggCCGGUACGacuccgCGUGCUGg- -3'
miRNA:   3'- -GUGCU--GCa--GGCCGUGCa-----GCACGACaa -5'
25530 5' -57 NC_005337.1 + 114438 0.66 0.834143
Target:  5'- gACGACGUCCGGCucauCGagGaGCgGUUc -3'
miRNA:   3'- gUGCUGCAGGCCGu---GCagCaCGaCAA- -5'
25530 5' -57 NC_005337.1 + 128707 0.66 0.825745
Target:  5'- gGCGACGcggCUGGCGCG-CGUGUa--- -3'
miRNA:   3'- gUGCUGCa--GGCCGUGCaGCACGacaa -5'
25530 5' -57 NC_005337.1 + 121829 0.67 0.81717
Target:  5'- gUAUGACG-CCGGC-CGaCGUGCUcGUg -3'
miRNA:   3'- -GUGCUGCaGGCCGuGCaGCACGA-CAa -5'
25530 5' -57 NC_005337.1 + 75969 0.67 0.81717
Target:  5'- gCACGGacuUGUCCGGCACGUCcucgaagGCgaagGUg -3'
miRNA:   3'- -GUGCU---GCAGGCCGUGCAGca-----CGa---CAa -5'
25530 5' -57 NC_005337.1 + 111215 0.67 0.808426
Target:  5'- cCGCcGCGuUCCGGCGCGcggCGUGCg--- -3'
miRNA:   3'- -GUGcUGC-AGGCCGUGCa--GCACGacaa -5'
25530 5' -57 NC_005337.1 + 101234 0.67 0.799522
Target:  5'- --aGGCGUCCGcGCGCGugcUCGcGCUGg- -3'
miRNA:   3'- gugCUGCAGGC-CGUGC---AGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 34064 0.67 0.799522
Target:  5'- aCGCGGCG-CCGGC-CGUCGUagaGCa--- -3'
miRNA:   3'- -GUGCUGCaGGCCGuGCAGCA---CGacaa -5'
25530 5' -57 NC_005337.1 + 39670 0.67 0.790467
Target:  5'- gCGCGugGcCCcgGGCACGUaCGUGCg--- -3'
miRNA:   3'- -GUGCugCaGG--CCGUGCA-GCACGacaa -5'
25530 5' -57 NC_005337.1 + 10441 0.67 0.790467
Target:  5'- gCGCGGCGg-UGcGCGCGUCGUGCg--- -3'
miRNA:   3'- -GUGCUGCagGC-CGUGCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 95235 0.67 0.790467
Target:  5'- gCGCGACugGUCCGuGCAC-UCGUGCg--- -3'
miRNA:   3'- -GUGCUG--CAGGC-CGUGcAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 48924 0.67 0.784042
Target:  5'- gCACcGCGUCCGGCaacugcgGCGUgaaggcggugauggaCGUGCUGg- -3'
miRNA:   3'- -GUGcUGCAGGCCG-------UGCA---------------GCACGACaa -5'
25530 5' -57 NC_005337.1 + 127889 0.67 0.781267
Target:  5'- gCGCGGCG-CCGGCgaGCG-CGUGCgGg- -3'
miRNA:   3'- -GUGCUGCaGGCCG--UGCaGCACGaCaa -5'
25530 5' -57 NC_005337.1 + 7268 0.67 0.771934
Target:  5'- cCACGACGcgcagCUGGacguaGUCGUGCUGg- -3'
miRNA:   3'- -GUGCUGCa----GGCCgug--CAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 86408 0.67 0.771934
Target:  5'- gCGCG-CGUCCGGCGCGaUGUGgaUGg- -3'
miRNA:   3'- -GUGCuGCAGGCCGUGCaGCACg-ACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.