miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 5' -56.7 NC_005337.1 + 70687 0.66 0.877375
Target:  5'- uGGCCacGGGCGAGUuccucaccggcgaccGCGCCAagGAGUg -3'
miRNA:   3'- cCCGG--CUUGCUCG---------------CGUGGUagCUCAg -5'
25533 5' -56.7 NC_005337.1 + 128788 0.66 0.859627
Target:  5'- cGGGUccaCGGGCGuGCGCACCGagCG-GUg -3'
miRNA:   3'- -CCCG---GCUUGCuCGCGUGGUa-GCuCAg -5'
25533 5' -56.7 NC_005337.1 + 130751 0.66 0.859627
Target:  5'- uGGGUCcGACGuGUGCACCGUgGAc-- -3'
miRNA:   3'- -CCCGGcUUGCuCGCGUGGUAgCUcag -5'
25533 5' -56.7 NC_005337.1 + 57495 0.66 0.881619
Target:  5'- aGGuGCUGGugGAcaGCAUCAUCGAG-Cg -3'
miRNA:   3'- -CC-CGGCUugCUcgCGUGGUAGCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 84216 0.66 0.881619
Target:  5'- cGGGCUGcuguGCGGGCGCgGCCugCGGG-Ca -3'
miRNA:   3'- -CCCGGCu---UGCUCGCG-UGGuaGCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 65764 0.66 0.881619
Target:  5'- -aGCCGAgcGCGGGCGCACCcaCGGc-- -3'
miRNA:   3'- ccCGGCU--UGCUCGCGUGGuaGCUcag -5'
25533 5' -56.7 NC_005337.1 + 84098 0.66 0.85188
Target:  5'- -cGCgGAcACGGGCGCggucGCCGucuguuUCGAGUCg -3'
miRNA:   3'- ccCGgCU-UGCUCGCG----UGGU------AGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 67769 0.66 0.85188
Target:  5'- cGGCCGGcUGcAGCgGCuCCAgCGAGUCg -3'
miRNA:   3'- cCCGGCUuGC-UCG-CGuGGUaGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 70866 0.66 0.85188
Target:  5'- -cGCUGuACGAGCGCGCCAU---GUCc -3'
miRNA:   3'- ccCGGCuUGCUCGCGUGGUAgcuCAG- -5'
25533 5' -56.7 NC_005337.1 + 39812 0.66 0.879507
Target:  5'- cGGCCGAGCGAcccggagcugcuccGcCGCACgGagGAGUa -3'
miRNA:   3'- cCCGGCUUGCU--------------C-GCGUGgUagCUCAg -5'
25533 5' -56.7 NC_005337.1 + 82191 0.66 0.859627
Target:  5'- cGGCCGc-CGGGCGCGCaCGgccggCG-GUCg -3'
miRNA:   3'- cCCGGCuuGCUCGCGUG-GUa----GCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 98991 0.66 0.874502
Target:  5'- gGGGCCGagGugGAGC-CGCCcccCGAGg- -3'
miRNA:   3'- -CCCGGC--UugCUCGcGUGGua-GCUCag -5'
25533 5' -56.7 NC_005337.1 + 99639 0.66 0.86717
Target:  5'- cGGGacaCGGACGuGCGCGgCAUCGccgCg -3'
miRNA:   3'- -CCCg--GCUUGCuCGCGUgGUAGCucaG- -5'
25533 5' -56.7 NC_005337.1 + 70980 0.66 0.859627
Target:  5'- cGGuGCUGAGCGGGCucuaCAUCGAGa- -3'
miRNA:   3'- -CC-CGGCUUGCUCGcgugGUAGCUCag -5'
25533 5' -56.7 NC_005337.1 + 46366 0.66 0.859627
Target:  5'- -cGCCG-GCGcaGGCGCGCCAgCGcGUCa -3'
miRNA:   3'- ccCGGCuUGC--UCGCGUGGUaGCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 60638 0.66 0.874502
Target:  5'- cGGGcCCGAGC-AGCGUcUCGUCGAagggguacggGUCg -3'
miRNA:   3'- -CCC-GGCUUGcUCGCGuGGUAGCU----------CAG- -5'
25533 5' -56.7 NC_005337.1 + 48361 0.66 0.874502
Target:  5'- aGGCCGcgguggugGACGAGaacgucagcCGCGCCuUCGAGcCg -3'
miRNA:   3'- cCCGGC--------UUGCUC---------GCGUGGuAGCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 10828 0.66 0.86717
Target:  5'- cGGGCgGGuCuAGCGCAUCucugugCGGGUCu -3'
miRNA:   3'- -CCCGgCUuGcUCGCGUGGua----GCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 14757 0.66 0.859627
Target:  5'- -cGCCGAA-GAGCGCuuCCAUCGccUCg -3'
miRNA:   3'- ccCGGCUUgCUCGCGu-GGUAGCucAG- -5'
25533 5' -56.7 NC_005337.1 + 91883 0.66 0.85188
Target:  5'- aGGCCGcGCGccGCgGCGCCucCGGGUCg -3'
miRNA:   3'- cCCGGCuUGCu-CG-CGUGGuaGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.