miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 5' -56.7 NC_005337.1 + 75199 0.69 0.726133
Target:  5'- cGGGCC--GCGAGaccaGCGCCAgccacccgGAGUCg -3'
miRNA:   3'- -CCCGGcuUGCUCg---CGUGGUag------CUCAG- -5'
25533 5' -56.7 NC_005337.1 + 22893 0.7 0.635407
Target:  5'- -uGCCGcGCGAGCgGCACCG-CGAGcUCu -3'
miRNA:   3'- ccCGGCuUGCUCG-CGUGGUaGCUC-AG- -5'
25533 5' -56.7 NC_005337.1 + 66943 0.7 0.645609
Target:  5'- cGGacCCGGACGcGCGCGCgAUCGAG-Cg -3'
miRNA:   3'- cCC--GGCUUGCuCGCGUGgUAGCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 110336 0.7 0.665974
Target:  5'- cGGCCGGGCGGcgucgcGCGCGCCugccgCGGG-Cg -3'
miRNA:   3'- cCCGGCUUGCU------CGCGUGGua---GCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 127569 0.7 0.676119
Target:  5'- cGGCUGcugcuggaGGCGGGCGCAgCCGUggacgucgcCGAGUCg -3'
miRNA:   3'- cCCGGC--------UUGCUCGCGU-GGUA---------GCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 68132 0.7 0.686229
Target:  5'- gGGGCCGGugGccgcGCGCGCCccuagCGGG-Cg -3'
miRNA:   3'- -CCCGGCUugCu---CGCGUGGua---GCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 79157 0.69 0.696294
Target:  5'- -cGCCGGACGAGgGCACCuccacgaucUCGGccGUCu -3'
miRNA:   3'- ccCGGCUUGCUCgCGUGGu--------AGCU--CAG- -5'
25533 5' -56.7 NC_005337.1 + 123603 0.69 0.706306
Target:  5'- cGGCCGcACGuGcCGCGCUcgCGGGUg -3'
miRNA:   3'- cCCGGCuUGCuC-GCGUGGuaGCUCAg -5'
25533 5' -56.7 NC_005337.1 + 117544 0.69 0.716255
Target:  5'- -cGUCGAcguCGGGUGUGCCGUCGAGg- -3'
miRNA:   3'- ccCGGCUu--GCUCGCGUGGUAGCUCag -5'
25533 5' -56.7 NC_005337.1 + 41500 0.71 0.604816
Target:  5'- gGGGCCcgcGAugGAGCGCAUCcgCGcGGcCa -3'
miRNA:   3'- -CCCGG---CUugCUCGCGUGGuaGC-UCaG- -5'
25533 5' -56.7 NC_005337.1 + 127393 0.71 0.601764
Target:  5'- uGGGCUccaGGGCGAGCGCcgcccucuacgaguACCucgaCGAGUCu -3'
miRNA:   3'- -CCCGG---CUUGCUCGCG--------------UGGua--GCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 122905 0.71 0.59465
Target:  5'- -cGCCGAugGCGAGCGCGC--UCGAGg- -3'
miRNA:   3'- ccCGGCU--UGCUCGCGUGguAGCUCag -5'
25533 5' -56.7 NC_005337.1 + 109776 0.8 0.192177
Target:  5'- cGGGCCGAGCGcgucgccGCGCACCAgguaguagUCGAgGUCg -3'
miRNA:   3'- -CCCGGCUUGCu------CGCGUGGU--------AGCU-CAG- -5'
25533 5' -56.7 NC_005337.1 + 91194 0.76 0.324893
Target:  5'- cGGGCgccgcgaugCGGACGGGCGCGCCGcCGguGGUCa -3'
miRNA:   3'- -CCCG---------GCUUGCUCGCGUGGUaGC--UCAG- -5'
25533 5' -56.7 NC_005337.1 + 94850 0.75 0.40458
Target:  5'- cGGcCCGAGCGGGCGC-CCGcgCGuGUCg -3'
miRNA:   3'- cCC-GGCUUGCUCGCGuGGUa-GCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 95598 0.72 0.524615
Target:  5'- cGGCCGggUGcagcAGCGCGCCAUggCGGcGUCc -3'
miRNA:   3'- cCCGGCuuGC----UCGCGUGGUA--GCU-CAG- -5'
25533 5' -56.7 NC_005337.1 + 42740 0.72 0.534456
Target:  5'- cGGCCGcgcCGAGCGUGCgGUgCGGGUCc -3'
miRNA:   3'- cCCGGCuu-GCUCGCGUGgUA-GCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 17027 0.72 0.54436
Target:  5'- cGGGCCGcGCGAagGCGCACggcagcggCAUCcGGUCg -3'
miRNA:   3'- -CCCGGCuUGCU--CGCGUG--------GUAGcUCAG- -5'
25533 5' -56.7 NC_005337.1 + 50379 0.72 0.554325
Target:  5'- cGGGCaCGGGCGccuggcgcgggGGCGCGCCG-CGcGUCg -3'
miRNA:   3'- -CCCG-GCUUGC-----------UCGCGUGGUaGCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 13922 0.71 0.574406
Target:  5'- cGGGUCGuggGCGGGCGCAgccCCGUCGuGcUCc -3'
miRNA:   3'- -CCCGGCu--UGCUCGCGU---GGUAGCuC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.