Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25533 | 5' | -56.7 | NC_005337.1 | + | 116148 | 1.1 | 0.001909 |
Target: 5'- gGGGCCGAACGAGCGCACCAUCGAGUCc -3' miRNA: 3'- -CCCGGCUUGCUCGCGUGGUAGCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 115497 | 0.8 | 0.192177 |
Target: 5'- gGGGCCGugGACGucaGGUGCGCCcUCGAGUCc -3' miRNA: 3'- -CCCGGC--UUGC---UCGCGUGGuAGCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 109776 | 0.8 | 0.192177 |
Target: 5'- cGGGCCGAGCGcgucgccGCGCACCAgguaguagUCGAgGUCg -3' miRNA: 3'- -CCCGGCUUGCu------CGCGUGGU--------AGCU-CAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 6067 | 0.76 | 0.324893 |
Target: 5'- cGGCC--ACGAGCgGCGCCAggaUCGAGUCc -3' miRNA: 3'- cCCGGcuUGCUCG-CGUGGU---AGCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 91194 | 0.76 | 0.324893 |
Target: 5'- cGGGCgccgcgaugCGGACGGGCGCGCCGcCGguGGUCa -3' miRNA: 3'- -CCCG---------GCUUGCUCGCGUGGUaGC--UCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 23961 | 0.76 | 0.363224 |
Target: 5'- cGGGCCGAACG-GCGCGCCcUCa---- -3' miRNA: 3'- -CCCGGCUUGCuCGCGUGGuAGcucag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 105617 | 0.75 | 0.396074 |
Target: 5'- gGGGCCG-GCGuGCcguucuGCACCGUCGGGcUCg -3' miRNA: 3'- -CCCGGCuUGCuCG------CGUGGUAGCUC-AG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 94850 | 0.75 | 0.40458 |
Target: 5'- cGGcCCGAGCGGGCGC-CCGcgCGuGUCg -3' miRNA: 3'- cCC-GGCUUGCUCGCGuGGUa-GCuCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 120619 | 0.74 | 0.421934 |
Target: 5'- aGGCCGGcaagACGGGCGuCACgAUCGAGg- -3' miRNA: 3'- cCCGGCU----UGCUCGC-GUGgUAGCUCag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 127046 | 0.74 | 0.439729 |
Target: 5'- cGGGCgCGGAgGuGCGCACCGaaggCGGGUUc -3' miRNA: 3'- -CCCG-GCUUgCuCGCGUGGUa---GCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 95598 | 0.72 | 0.524615 |
Target: 5'- cGGCCGggUGcagcAGCGCGCCAUggCGGcGUCc -3' miRNA: 3'- cCCGGCuuGC----UCGCGUGGUA--GCU-CAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 42740 | 0.72 | 0.534456 |
Target: 5'- cGGCCGcgcCGAGCGUGCgGUgCGGGUCc -3' miRNA: 3'- cCCGGCuu-GCUCGCGUGgUA-GCUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 17027 | 0.72 | 0.54436 |
Target: 5'- cGGGCCGcGCGAagGCGCACggcagcggCAUCcGGUCg -3' miRNA: 3'- -CCCGGCuUGCU--CGCGUG--------GUAGcUCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 50379 | 0.72 | 0.554325 |
Target: 5'- cGGGCaCGGGCGccuggcgcgggGGCGCGCCG-CGcGUCg -3' miRNA: 3'- -CCCG-GCUUGC-----------UCGCGUGGUaGCuCAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 13922 | 0.71 | 0.574406 |
Target: 5'- cGGGUCGuggGCGGGCGCAgccCCGUCGuGcUCc -3' miRNA: 3'- -CCCGGCu--UGCUCGCGU---GGUAGCuC-AG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 124811 | 0.71 | 0.584511 |
Target: 5'- gGGGCCGcAGCGAGgaggugcucCGCACgggCAUCGAGg- -3' miRNA: 3'- -CCCGGC-UUGCUC---------GCGUG---GUAGCUCag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 39442 | 0.71 | 0.584511 |
Target: 5'- cGGGCCGcgcuCGGuGCGCACgAUgGAGUa -3' miRNA: 3'- -CCCGGCuu--GCU-CGCGUGgUAgCUCAg -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 122905 | 0.71 | 0.59465 |
Target: 5'- -cGCCGAugGCGAGCGCGC--UCGAGg- -3' miRNA: 3'- ccCGGCU--UGCUCGCGUGguAGCUCag -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 130646 | 0.71 | 0.59465 |
Target: 5'- uGGGCgCGGACGuGCGCGCgAggGAcGUCu -3' miRNA: 3'- -CCCG-GCUUGCuCGCGUGgUagCU-CAG- -5' |
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25533 | 5' | -56.7 | NC_005337.1 | + | 127393 | 0.71 | 0.601764 |
Target: 5'- uGGGCUccaGGGCGAGCGCcgcccucuacgaguACCucgaCGAGUCu -3' miRNA: 3'- -CCCGG---CUUGCUCGCG--------------UGGua--GCUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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