miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 5' -56.7 NC_005337.1 + 875 0.68 0.764748
Target:  5'- cGGCCGGGCggaaGAGCGCGCCGagcaggagccCGAG-Cg -3'
miRNA:   3'- cCCGGCUUG----CUCGCGUGGUa---------GCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 875 0.68 0.764748
Target:  5'- cGGCCGGGCggaaGAGCGCGCCGagcaggagccCGAG-Cg -3'
miRNA:   3'- cCCGGCUUG----CUCGCGUGGUa---------GCUCaG- -5'
25533 5' -56.7 NC_005337.1 + 983 0.67 0.813803
Target:  5'- gGGGCUGGcgcggcgcgcggaggGCGGGCGUcgccuggagGCCGUCGAa-- -3'
miRNA:   3'- -CCCGGCU---------------UGCUCGCG---------UGGUAGCUcag -5'
25533 5' -56.7 NC_005337.1 + 983 0.67 0.813803
Target:  5'- gGGGCUGGcgcggcgcgcggaggGCGGGCGUcgccuggagGCCGUCGAa-- -3'
miRNA:   3'- -CCCGGCU---------------UGCUCGCG---------UGGUAGCUcag -5'
25533 5' -56.7 NC_005337.1 + 2221 0.7 0.635407
Target:  5'- cGGGCC--GCGAGCGCGCgCAggaaccgcgCGAGg- -3'
miRNA:   3'- -CCCGGcuUGCUCGCGUG-GUa--------GCUCag -5'
25533 5' -56.7 NC_005337.1 + 2286 0.66 0.859627
Target:  5'- cGGGCCGAACagGAGCuuggcgaacaGCuCCGcgucgaacgacuUCGAGUUg -3'
miRNA:   3'- -CCCGGCUUG--CUCG----------CGuGGU------------AGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 3126 0.68 0.754291
Target:  5'- cGGCCGGccucGCGuccAGCGCGCgGUCGAugcaagugaugugGUCg -3'
miRNA:   3'- cCCGGCU----UGC---UCGCGUGgUAGCU-------------CAG- -5'
25533 5' -56.7 NC_005337.1 + 6067 0.76 0.324893
Target:  5'- cGGCC--ACGAGCgGCGCCAggaUCGAGUCc -3'
miRNA:   3'- cCCGGcuUGCUCG-CGUGGU---AGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 10828 0.66 0.86717
Target:  5'- cGGGCgGGuCuAGCGCAUCucugugCGGGUCu -3'
miRNA:   3'- -CCCGgCUuGcUCGCGUGGua----GCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 10874 0.7 0.635407
Target:  5'- -cGCCGAGCGGGCgaGCACCA-CGuGUg -3'
miRNA:   3'- ccCGGCUUGCUCG--CGUGGUaGCuCAg -5'
25533 5' -56.7 NC_005337.1 + 11922 0.69 0.735931
Target:  5'- uGGcGuCCGAuGCGGcacccgggcGCGCGCCGUCGAGg- -3'
miRNA:   3'- -CC-C-GGCU-UGCU---------CGCGUGGUAGCUCag -5'
25533 5' -56.7 NC_005337.1 + 13922 0.71 0.574406
Target:  5'- cGGGUCGuggGCGGGCGCAgccCCGUCGuGcUCc -3'
miRNA:   3'- -CCCGGCu--UGCUCGCGU---GGUAGCuC-AG- -5'
25533 5' -56.7 NC_005337.1 + 14757 0.66 0.859627
Target:  5'- -cGCCGAA-GAGCGCuuCCAUCGccUCg -3'
miRNA:   3'- ccCGGCUUgCUCGCGu-GGUAGCucAG- -5'
25533 5' -56.7 NC_005337.1 + 17027 0.72 0.54436
Target:  5'- cGGGCCGcGCGAagGCGCACggcagcggCAUCcGGUCg -3'
miRNA:   3'- -CCCGGCuUGCU--CGCGUG--------GUAGcUCAG- -5'
25533 5' -56.7 NC_005337.1 + 17399 0.67 0.80149
Target:  5'- aGGCCagguugaugagGAACGGGCGCGCguUCGucugcaccauGUCg -3'
miRNA:   3'- cCCGG-----------CUUGCUCGCGUGguAGCu---------CAG- -5'
25533 5' -56.7 NC_005337.1 + 21116 0.67 0.810317
Target:  5'- cGGCCGccACGcAGCGCACCG-CGAa-- -3'
miRNA:   3'- cCCGGCu-UGC-UCGCGUGGUaGCUcag -5'
25533 5' -56.7 NC_005337.1 + 22893 0.7 0.635407
Target:  5'- -uGCCGcGCGAGCgGCACCG-CGAGcUCu -3'
miRNA:   3'- ccCGGCuUGCUCG-CGUGGUaGCUC-AG- -5'
25533 5' -56.7 NC_005337.1 + 23357 0.66 0.874502
Target:  5'- uGGGCCucauGAacuACGGGCgGCACCucaaCGuGUCg -3'
miRNA:   3'- -CCCGG----CU---UGCUCG-CGUGGua--GCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 23961 0.76 0.363224
Target:  5'- cGGGCCGAACG-GCGCGCCcUCa---- -3'
miRNA:   3'- -CCCGGCUUGCuCGCGUGGuAGcucag -5'
25533 5' -56.7 NC_005337.1 + 24577 0.67 0.80149
Target:  5'- -cGCCccaaGAGCGAGCagACCAUCGAGcUCg -3'
miRNA:   3'- ccCGG----CUUGCUCGcgUGGUAGCUC-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.