miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 128143 0.66 0.99239
Target:  5'- cGCGCGAaacgcgcUCGGACGcACGCCG-CuGCAc -3'
miRNA:   3'- -CGUGUUc------AGCCUGU-UGCGGCaGuUGU- -5'
25534 5' -51 NC_005337.1 + 14226 0.66 0.989994
Target:  5'- aGUACAAGgccuuucCGGACAGCuUgGUCAAUAc -3'
miRNA:   3'- -CGUGUUCa------GCCUGUUGcGgCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 30072 0.66 0.987043
Target:  5'- aCACGAGUCGGGCGcaggugcagGCGUCcucCAGCu -3'
miRNA:   3'- cGUGUUCAGCCUGU---------UGCGGca-GUUGu -5'
25534 5' -51 NC_005337.1 + 46370 0.66 0.991256
Target:  5'- gGCGCAGG-CGcGcCAGCGC-GUCAGCc -3'
miRNA:   3'- -CGUGUUCaGC-CuGUUGCGgCAGUUGu -5'
25534 5' -51 NC_005337.1 + 2054 0.66 0.989994
Target:  5'- aGUugAGGUCGGccCcgUGCCG-CAGCAg -3'
miRNA:   3'- -CGugUUCAGCCu-GuuGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 82944 0.66 0.988593
Target:  5'- cGUAUggGgUCGGAgAGCGgCGUgGACu -3'
miRNA:   3'- -CGUGuuC-AGCCUgUUGCgGCAgUUGu -5'
25534 5' -51 NC_005337.1 + 115492 0.66 0.99239
Target:  5'- cGCACGGGgccgUGGACGucagguGCGCCcUCGAg- -3'
miRNA:   3'- -CGUGUUCa---GCCUGU------UGCGGcAGUUgu -5'
25534 5' -51 NC_005337.1 + 122237 0.66 0.988593
Target:  5'- cGC-CAAGUCGGGCGugaACGugaCCGUCcuCGu -3'
miRNA:   3'- -CGuGUUCAGCCUGU---UGC---GGCAGuuGU- -5'
25534 5' -51 NC_005337.1 + 39384 0.66 0.988144
Target:  5'- uGCugAAcUCGGGCGagcgguuuccggagGCGCUGuUCGACAc -3'
miRNA:   3'- -CGugUUcAGCCUGU--------------UGCGGC-AGUUGU- -5'
25534 5' -51 NC_005337.1 + 30731 0.66 0.99239
Target:  5'- cGCAgAAGUCGuACAGCGCgCGcuccucgggCGGCAg -3'
miRNA:   3'- -CGUgUUCAGCcUGUUGCG-GCa--------GUUGU- -5'
25534 5' -51 NC_005337.1 + 89093 0.66 0.988593
Target:  5'- -aACAGGagGGACAgagacGCGCUGUCG-CGg -3'
miRNA:   3'- cgUGUUCagCCUGU-----UGCGGCAGUuGU- -5'
25534 5' -51 NC_005337.1 + 119856 0.66 0.988593
Target:  5'- cGCACGuGUCuccuGGCGGCGCgGUuCAGCGc -3'
miRNA:   3'- -CGUGUuCAGc---CUGUUGCGgCA-GUUGU- -5'
25534 5' -51 NC_005337.1 + 71121 0.66 0.989994
Target:  5'- aGCACGuccUCGGGCGGCGgcaCCGgCAACu -3'
miRNA:   3'- -CGUGUuc-AGCCUGUUGC---GGCaGUUGu -5'
25534 5' -51 NC_005337.1 + 125948 0.66 0.99239
Target:  5'- uGCuCGAGgCGGGCGugGgCGUgAACGc -3'
miRNA:   3'- -CGuGUUCaGCCUGUugCgGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 62780 0.66 0.991256
Target:  5'- aCGCgAAGUCGGGCAccGCGuCCGgcgUGGCGu -3'
miRNA:   3'- cGUG-UUCAGCCUGU--UGC-GGCa--GUUGU- -5'
25534 5' -51 NC_005337.1 + 64801 0.66 0.987043
Target:  5'- cGCGCGg--CGGcACGACGCCGg-AACAc -3'
miRNA:   3'- -CGUGUucaGCC-UGUUGCGGCagUUGU- -5'
25534 5' -51 NC_005337.1 + 83032 0.66 0.988593
Target:  5'- cGUACAcGgCGGACA---CCGUCAGCAu -3'
miRNA:   3'- -CGUGUuCaGCCUGUugcGGCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 82531 0.66 0.988593
Target:  5'- aGCGcCAGGgCGGGCAGCcuGCCGcCAGgCAg -3'
miRNA:   3'- -CGU-GUUCaGCCUGUUG--CGGCaGUU-GU- -5'
25534 5' -51 NC_005337.1 + 17107 0.66 0.98986
Target:  5'- cGCGCGAGUgCGcccGGCAGaacucgcCGCCGUCGuGCAu -3'
miRNA:   3'- -CGUGUUCA-GC---CUGUU-------GCGGCAGU-UGU- -5'
25534 5' -51 NC_005337.1 + 115091 0.66 0.987043
Target:  5'- gGCAUcgugGAGUcCGGACacccgGugGCCGUCGccgACAu -3'
miRNA:   3'- -CGUG----UUCA-GCCUG-----UugCGGCAGU---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.