miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 1935 0.67 0.976507
Target:  5'- aGCGgAAGUCGGuCGuGCGCaugucgcugcccgCGUCAGCGa -3'
miRNA:   3'- -CGUgUUCAGCCuGU-UGCG-------------GCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 2054 0.66 0.989994
Target:  5'- aGUugAGGUCGGccCcgUGCCG-CAGCAg -3'
miRNA:   3'- -CGugUUCAGCCu-GuuGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 2721 0.69 0.9403
Target:  5'- aGCACGAG-CGcGACGACGuCCGcCggUAg -3'
miRNA:   3'- -CGUGUUCaGC-CUGUUGC-GGCaGuuGU- -5'
25534 5' -51 NC_005337.1 + 4151 0.72 0.863725
Target:  5'- uGUACAGGgCGGccuCAACGCCGUCuucCAu -3'
miRNA:   3'- -CGUGUUCaGCCu--GUUGCGGCAGuu-GU- -5'
25534 5' -51 NC_005337.1 + 5755 0.68 0.968246
Target:  5'- gGCACGgcGG-CGGGCGGCaGCCGcgCGACc -3'
miRNA:   3'- -CGUGU--UCaGCCUGUUG-CGGCa-GUUGu -5'
25534 5' -51 NC_005337.1 + 6574 0.67 0.985337
Target:  5'- gGCGCAgaacccGGUCGcGGCcaccGGCGCCagGUCGGCGc -3'
miRNA:   3'- -CGUGU------UCAGC-CUG----UUGCGG--CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 6720 0.68 0.96497
Target:  5'- aGCAgcAGcCGGACAACGCggaCGUCGAg- -3'
miRNA:   3'- -CGUguUCaGCCUGUUGCG---GCAGUUgu -5'
25534 5' -51 NC_005337.1 + 8131 0.7 0.912798
Target:  5'- -aGCGAGUCGGG-GACGCCGggCAugGc -3'
miRNA:   3'- cgUGUUCAGCCUgUUGCGGCa-GUugU- -5'
25534 5' -51 NC_005337.1 + 8915 0.68 0.961464
Target:  5'- aGCACAuGUaCGuGuGCAGCGCCGUgAACc -3'
miRNA:   3'- -CGUGUuCA-GC-C-UGUUGCGGCAgUUGu -5'
25534 5' -51 NC_005337.1 + 9752 0.74 0.775353
Target:  5'- aGCGCGcGUCGGcCGGCGCCGggUUGGCAc -3'
miRNA:   3'- -CGUGUuCAGCCuGUUGCGGC--AGUUGU- -5'
25534 5' -51 NC_005337.1 + 11858 0.67 0.981417
Target:  5'- cGCAUcGGcgCGGACAggcgccgcGCGCCGccgcgCAGCAc -3'
miRNA:   3'- -CGUGuUCa-GCCUGU--------UGCGGCa----GUUGU- -5'
25534 5' -51 NC_005337.1 + 11935 0.69 0.953738
Target:  5'- gGCACc---CGGGCGcGCGCCGUCGAgGg -3'
miRNA:   3'- -CGUGuucaGCCUGU-UGCGGCAGUUgU- -5'
25534 5' -51 NC_005337.1 + 14226 0.66 0.989994
Target:  5'- aGUACAAGgccuuucCGGACAGCuUgGUCAAUAc -3'
miRNA:   3'- -CGUGUUCa------GCCUGUUGcGgCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 15494 0.76 0.630905
Target:  5'- gGCGCugcugCGGACAGCGUCGcCAGCAa -3'
miRNA:   3'- -CGUGuuca-GCCUGUUGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 16095 0.75 0.703718
Target:  5'- gGCGCGAGcucgaaCGGguccgccGCGGCGCCGUCAACc -3'
miRNA:   3'- -CGUGUUCa-----GCC-------UGUUGCGGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 17107 0.66 0.98986
Target:  5'- cGCGCGAGUgCGcccGGCAGaacucgcCGCCGUCGuGCAu -3'
miRNA:   3'- -CGUGUUCA-GC---CUGUU-------GCGGCAGU-UGU- -5'
25534 5' -51 NC_005337.1 + 22133 0.68 0.974134
Target:  5'- -gGCGAGUacgCGGACAACGaCCGcCAGg- -3'
miRNA:   3'- cgUGUUCA---GCCUGUUGC-GGCaGUUgu -5'
25534 5' -51 NC_005337.1 + 25057 0.67 0.985337
Target:  5'- uGCGCGccGUgCGGGCGGCGuUCGUCAAg- -3'
miRNA:   3'- -CGUGUu-CA-GCCUGUUGC-GGCAGUUgu -5'
25534 5' -51 NC_005337.1 + 25293 0.68 0.96497
Target:  5'- cGCGCAcGgCGGGCGGgcCGCgCGUCGACc -3'
miRNA:   3'- -CGUGUuCaGCCUGUU--GCG-GCAGUUGu -5'
25534 5' -51 NC_005337.1 + 25698 0.69 0.957722
Target:  5'- cGCGCAGGagCGGguuguccgGCcGCGCCGcCAGCGu -3'
miRNA:   3'- -CGUGUUCa-GCC--------UGuUGCGGCaGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.