miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 115689 1.12 0.00519
Target:  5'- cGCACAAGUCGGACAACGCCGUCAACAa -3'
miRNA:   3'- -CGUGUUCAGCCUGUUGCGGCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 99088 0.77 0.577983
Target:  5'- -gGCAGGUguggacggCGGACGACGCCGUCGcCGa -3'
miRNA:   3'- cgUGUUCA--------GCCUGUUGCGGCAGUuGU- -5'
25534 5' -51 NC_005337.1 + 15494 0.76 0.630905
Target:  5'- gGCGCugcugCGGACAGCGUCGcCAGCAa -3'
miRNA:   3'- -CGUGuuca-GCCUGUUGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 64089 0.76 0.662736
Target:  5'- cGCGCAGGUU-GACGAUGUCGUUGACGa -3'
miRNA:   3'- -CGUGUUCAGcCUGUUGCGGCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 16095 0.75 0.703718
Target:  5'- gGCGCGAGcucgaaCGGguccgccGCGGCGCCGUCAACc -3'
miRNA:   3'- -CGUGUUCa-----GCC-------UGUUGCGGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 68497 0.74 0.745721
Target:  5'- cGCACcGGgggcgCGGACAGCGCCGgcgUCAGgAa -3'
miRNA:   3'- -CGUGuUCa----GCCUGUUGCGGC---AGUUgU- -5'
25534 5' -51 NC_005337.1 + 121710 0.74 0.755719
Target:  5'- cGCGCGGGgaggCGGACAagACGCCG-CuGCAc -3'
miRNA:   3'- -CGUGUUCa---GCCUGU--UGCGGCaGuUGU- -5'
25534 5' -51 NC_005337.1 + 9752 0.74 0.775353
Target:  5'- aGCGCGcGUCGGcCGGCGCCGggUUGGCAc -3'
miRNA:   3'- -CGUGUuCAGCCuGUUGCGGC--AGUUGU- -5'
25534 5' -51 NC_005337.1 + 64210 0.73 0.784013
Target:  5'- cGCACGAGUucgcgguccgcgaCGGGCAGCGCCucuuugCGGCGc -3'
miRNA:   3'- -CGUGUUCA-------------GCCUGUUGCGGca----GUUGU- -5'
25534 5' -51 NC_005337.1 + 45127 0.73 0.791611
Target:  5'- aGCACccagacGUCGGGCAgcuagucgcgcccgGCGCCaGUCGGCAg -3'
miRNA:   3'- -CGUGuu----CAGCCUGU--------------UGCGG-CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 98236 0.73 0.792554
Target:  5'- gGCACGAcgagcacGUCGGGCAGuccguguCGCCGUCcACGa -3'
miRNA:   3'- -CGUGUU-------CAGCCUGUU-------GCGGCAGuUGU- -5'
25534 5' -51 NC_005337.1 + 71346 0.73 0.794436
Target:  5'- uGCACAAcaUCGaGuACAGCGCCGUCAAgGa -3'
miRNA:   3'- -CGUGUUc-AGC-C-UGUUGCGGCAGUUgU- -5'
25534 5' -51 NC_005337.1 + 65715 0.73 0.794436
Target:  5'- cGCACGcGGUgGGGCGcgcccgGCGCCGUCAcuaGCGc -3'
miRNA:   3'- -CGUGU-UCAgCCUGU------UGCGGCAGU---UGU- -5'
25534 5' -51 NC_005337.1 + 111545 0.73 0.821853
Target:  5'- cGUGCAGGUCGGggucgGCggUGCCGUaGACGa -3'
miRNA:   3'- -CGUGUUCAGCC-----UGuuGCGGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 91835 0.72 0.839217
Target:  5'- uGCACAcgacggGGUUGG-CGAUGuCCGUCAGCu -3'
miRNA:   3'- -CGUGU------UCAGCCuGUUGC-GGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 99589 0.72 0.839217
Target:  5'- gGCGCu--UCGGGCGggacuGCGCCGUgAGCAa -3'
miRNA:   3'- -CGUGuucAGCCUGU-----UGCGGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 29104 0.72 0.8476
Target:  5'- aGCAgGGGUC-GACcACGCCGUgCAGCGc -3'
miRNA:   3'- -CGUgUUCAGcCUGuUGCGGCA-GUUGU- -5'
25534 5' -51 NC_005337.1 + 111398 0.72 0.855772
Target:  5'- cGCGCGGcacGUCGGACAguuucgagagcGCGCCGcggucCAGCAc -3'
miRNA:   3'- -CGUGUU---CAGCCUGU-----------UGCGGCa----GUUGU- -5'
25534 5' -51 NC_005337.1 + 45547 0.72 0.855772
Target:  5'- uGCugGAGUCGG-CGcCGCCGUgGugGu -3'
miRNA:   3'- -CGugUUCAGCCuGUuGCGGCAgUugU- -5'
25534 5' -51 NC_005337.1 + 45721 0.72 0.86294
Target:  5'- cGCAcCGAG-CGGGCuggugacGGCGCCGUCuAGCAc -3'
miRNA:   3'- -CGU-GUUCaGCCUG-------UUGCGGCAG-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.