miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 127792 0.7 0.912798
Target:  5'- gGUGCGGGUgcUGGugGACGCCGgcgcugacgUCAACGu -3'
miRNA:   3'- -CGUGUUCA--GCCugUUGCGGC---------AGUUGU- -5'
25534 5' -51 NC_005337.1 + 78106 0.71 0.878952
Target:  5'- cGCugAGGUCcaGGACuACGgCGUCGGCc -3'
miRNA:   3'- -CGugUUCAG--CCUGuUGCgGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 89351 0.71 0.886213
Target:  5'- gGCGCAugaGGUC-GAUGGCGCCGUUGGCc -3'
miRNA:   3'- -CGUGU---UCAGcCUGUUGCGGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 108955 0.71 0.886213
Target:  5'- cGUugGGGUCGuACAcGCGCCgGUCGACGc -3'
miRNA:   3'- -CGugUUCAGCcUGU-UGCGG-CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 88889 0.71 0.893232
Target:  5'- aGCAcCGGGUCGGugGucuCGCaggugGUCAACAc -3'
miRNA:   3'- -CGU-GUUCAGCCugUu--GCGg----CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 110797 0.7 0.905887
Target:  5'- aGCACGuucuccacgucggAGUCGGAC-ACGuuG-CAGCAg -3'
miRNA:   3'- -CGUGU-------------UCAGCCUGuUGCggCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 75243 0.7 0.906528
Target:  5'- gGCGCgAAGUCGGugAAgGCCG-CGcGCAc -3'
miRNA:   3'- -CGUG-UUCAGCCugUUgCGGCaGU-UGU- -5'
25534 5' -51 NC_005337.1 + 82532 0.7 0.912798
Target:  5'- uGCGCAGGUUgaGGauGCAGCGCCG-CAAg- -3'
miRNA:   3'- -CGUGUUCAG--CC--UGUUGCGGCaGUUgu -5'
25534 5' -51 NC_005337.1 + 58685 0.7 0.912798
Target:  5'- gGUACAcguacucggucAGUCGcGuCAuCGCCGUCGGCAg -3'
miRNA:   3'- -CGUGU-----------UCAGC-CuGUuGCGGCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 4151 0.72 0.863725
Target:  5'- uGUACAGGgCGGccuCAACGCCGUCuucCAu -3'
miRNA:   3'- -CGUGUUCaGCCu--GUUGCGGCAGuu-GU- -5'
25534 5' -51 NC_005337.1 + 45721 0.72 0.86294
Target:  5'- cGCAcCGAG-CGGGCuggugacGGCGCCGUCuAGCAc -3'
miRNA:   3'- -CGU-GUUCaGCCUG-------UUGCGGCAG-UUGU- -5'
25534 5' -51 NC_005337.1 + 45547 0.72 0.855772
Target:  5'- uGCugGAGUCGG-CGcCGCCGUgGugGu -3'
miRNA:   3'- -CGugUUCAGCCuGUuGCGGCAgUugU- -5'
25534 5' -51 NC_005337.1 + 121710 0.74 0.755719
Target:  5'- cGCGCGGGgaggCGGACAagACGCCG-CuGCAc -3'
miRNA:   3'- -CGUGUUCa---GCCUGU--UGCGGCaGuUGU- -5'
25534 5' -51 NC_005337.1 + 9752 0.74 0.775353
Target:  5'- aGCGCGcGUCGGcCGGCGCCGggUUGGCAc -3'
miRNA:   3'- -CGUGUuCAGCCuGUUGCGGC--AGUUGU- -5'
25534 5' -51 NC_005337.1 + 64210 0.73 0.784013
Target:  5'- cGCACGAGUucgcgguccgcgaCGGGCAGCGCCucuuugCGGCGc -3'
miRNA:   3'- -CGUGUUCA-------------GCCUGUUGCGGca----GUUGU- -5'
25534 5' -51 NC_005337.1 + 98236 0.73 0.792554
Target:  5'- gGCACGAcgagcacGUCGGGCAGuccguguCGCCGUCcACGa -3'
miRNA:   3'- -CGUGUU-------CAGCCUGUU-------GCGGCAGuUGU- -5'
25534 5' -51 NC_005337.1 + 71346 0.73 0.794436
Target:  5'- uGCACAAcaUCGaGuACAGCGCCGUCAAgGa -3'
miRNA:   3'- -CGUGUUc-AGC-C-UGUUGCGGCAGUUgU- -5'
25534 5' -51 NC_005337.1 + 99589 0.72 0.839217
Target:  5'- gGCGCu--UCGGGCGggacuGCGCCGUgAGCAa -3'
miRNA:   3'- -CGUGuucAGCCUGU-----UGCGGCAgUUGU- -5'
25534 5' -51 NC_005337.1 + 91835 0.72 0.839217
Target:  5'- uGCACAcgacggGGUUGG-CGAUGuCCGUCAGCu -3'
miRNA:   3'- -CGUGU------UCAGCCuGUUGC-GGCAGUUGu -5'
25534 5' -51 NC_005337.1 + 29104 0.72 0.8476
Target:  5'- aGCAgGGGUC-GACcACGCCGUgCAGCGc -3'
miRNA:   3'- -CGUgUUCAGcCUGuUGCGGCA-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.