miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25535 3' -64.7 NC_005337.1 + 38682 0.66 0.523933
Target:  5'- cGCGCUG-CUGCacCCGGCCGaccCCGGa- -3'
miRNA:   3'- cUGCGGCaGACG--GGCCGGCa--GGCCcu -5'
25535 3' -64.7 NC_005337.1 + 110823 0.66 0.518365
Target:  5'- uGACGCUGUagucGCCCaggcGGCUGcuccacaccgcggucUCCGGGAu -3'
miRNA:   3'- -CUGCGGCAga--CGGG----CCGGC---------------AGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 128306 0.66 0.514666
Target:  5'- uGGCGCCGUCUGCUCGcGCgCGg-CGcGAg -3'
miRNA:   3'- -CUGCGGCAGACGGGC-CG-GCagGCcCU- -5'
25535 3' -64.7 NC_005337.1 + 38969 0.66 0.514666
Target:  5'- cGGCGcCCGagUGCgcgugcgucaCCGGCCGggcgCUGGGGa -3'
miRNA:   3'- -CUGC-GGCagACG----------GGCCGGCa---GGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 5833 0.66 0.514666
Target:  5'- aGAgGUCGUa--CCCGGCCGcCCGcGGGg -3'
miRNA:   3'- -CUgCGGCAgacGGGCCGGCaGGC-CCU- -5'
25535 3' -64.7 NC_005337.1 + 83354 0.66 0.496338
Target:  5'- gGAgGCCGacuggCUGCggaCCGGCCG-CUGGGc -3'
miRNA:   3'- -CUgCGGCa----GACG---GGCCGGCaGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 97596 0.66 0.493613
Target:  5'- gGACGCCGUgCUGaagucgcuggccauCgCCGGCaccuUCCGGGAc -3'
miRNA:   3'- -CUGCGGCA-GAC--------------G-GGCCGgc--AGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 101085 0.66 0.487284
Target:  5'- -cCGCCGUCgggaggGCCCGuCCGgCgCGGGGc -3'
miRNA:   3'- cuGCGGCAGa-----CGGGCcGGCaG-GCCCU- -5'
25535 3' -64.7 NC_005337.1 + 46674 0.66 0.47831
Target:  5'- cGCGCagcaGUC-GCCCGaGCgGcgCCGGGAg -3'
miRNA:   3'- cUGCGg---CAGaCGGGC-CGgCa-GGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 68492 0.66 0.47831
Target:  5'- gGGCGCCGcgCUGCUggCGGCCGU--GGGu -3'
miRNA:   3'- -CUGCGGCa-GACGG--GCCGGCAggCCCu -5'
25535 3' -64.7 NC_005337.1 + 64512 0.66 0.47831
Target:  5'- aGCG-CGUacaugGCCaCGGCCGUCCuGGAg -3'
miRNA:   3'- cUGCgGCAga---CGG-GCCGGCAGGcCCU- -5'
25535 3' -64.7 NC_005337.1 + 131742 0.67 0.46061
Target:  5'- cAC-CCGgg-GCCCGGaCGUCCGGGc -3'
miRNA:   3'- cUGcGGCagaCGGGCCgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 90165 0.67 0.46061
Target:  5'- cGACGCCGacgCUGauCCCuGCCaggCCGGGGa -3'
miRNA:   3'- -CUGCGGCa--GAC--GGGcCGGca-GGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 74646 0.67 0.46061
Target:  5'- gGGCGCCG-CUGCCCGGggagaCC-UUCGuGGAc -3'
miRNA:   3'- -CUGCGGCaGACGGGCC-----GGcAGGC-CCU- -5'
25535 3' -64.7 NC_005337.1 + 54230 0.67 0.46061
Target:  5'- aGGCGuaGaUCUccucGUCCGGCgCGUCCGGGc -3'
miRNA:   3'- -CUGCggC-AGA----CGGGCCG-GCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 29760 0.67 0.451891
Target:  5'- cGGgGUCGUCcaaCCGGgCGUCCGGGu -3'
miRNA:   3'- -CUgCGGCAGacgGGCCgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 68206 0.67 0.451891
Target:  5'- gGGCGCCGcugCggGCCCGccugacGgCGUCCGGGu -3'
miRNA:   3'- -CUGCGGCa--Ga-CGGGC------CgGCAGGCCCu -5'
25535 3' -64.7 NC_005337.1 + 132263 0.67 0.443263
Target:  5'- uGACGCCGauggccgugCUGCUgCGGUCGUCCGacgcgacgcuGGAg -3'
miRNA:   3'- -CUGCGGCa--------GACGG-GCCGGCAGGC----------CCU- -5'
25535 3' -64.7 NC_005337.1 + 9980 0.67 0.434728
Target:  5'- cGAgGCCGcguccUCgGCCaCGGCaggguucucguCGUCCGGGAc -3'
miRNA:   3'- -CUgCGGC-----AGaCGG-GCCG-----------GCAGGCCCU- -5'
25535 3' -64.7 NC_005337.1 + 65772 0.67 0.434728
Target:  5'- uGACGCCGgcgCUGUCCGcGCCc-CCGGu- -3'
miRNA:   3'- -CUGCGGCa--GACGGGC-CGGcaGGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.