Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25535 | 3' | -64.7 | NC_005337.1 | + | 115417 | 0.91 | 0.01012 |
Target: 5'- gGACGCCGUCU-CgCCGGCCGUCCGGGAg -3' miRNA: 3'- -CUGCGGCAGAcG-GGCCGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 131742 | 0.67 | 0.46061 |
Target: 5'- cAC-CCGgg-GCCCGGaCGUCCGGGc -3' miRNA: 3'- cUGcGGCagaCGGGCCgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 43339 | 0.68 | 0.393536 |
Target: 5'- -uCGCCGaC-GCgCUGGCCG-CCGGGAa -3' miRNA: 3'- cuGCGGCaGaCG-GGCCGGCaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 5809 | 0.68 | 0.385606 |
Target: 5'- cACGCgGUCU-CCCGcGCCGgUCCGGcGGu -3' miRNA: 3'- cUGCGgCAGAcGGGC-CGGC-AGGCC-CU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 66061 | 0.69 | 0.361704 |
Target: 5'- gGACGCCGUCaggcggGCCCGcagcggcGCCc-CCGGGGc -3' miRNA: 3'- -CUGCGGCAGa-----CGGGC-------CGGcaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 118794 | 0.69 | 0.347572 |
Target: 5'- cGGCGCCGUCgUGCCgCGcgcGCCGUCgGuGGc -3' miRNA: 3'- -CUGCGGCAG-ACGG-GC---CGGCAGgC-CCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 110823 | 0.66 | 0.518365 |
Target: 5'- uGACGCUGUagucGCCCaggcGGCUGcuccacaccgcggucUCCGGGAu -3' miRNA: 3'- -CUGCGGCAga--CGGG----CCGGC---------------AGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 38969 | 0.66 | 0.514666 |
Target: 5'- cGGCGcCCGagUGCgcgugcgucaCCGGCCGggcgCUGGGGa -3' miRNA: 3'- -CUGC-GGCagACG----------GGCCGGCa---GGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 46674 | 0.66 | 0.47831 |
Target: 5'- cGCGCagcaGUC-GCCCGaGCgGcgCCGGGAg -3' miRNA: 3'- cUGCGg---CAGaCGGGC-CGgCa-GGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 29760 | 0.67 | 0.451891 |
Target: 5'- cGGgGUCGUCcaaCCGGgCGUCCGGGu -3' miRNA: 3'- -CUgCGGCAGacgGGCCgGCAGGCCCu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 92875 | 0.68 | 0.377006 |
Target: 5'- gGACGCCGgacgucaUCUGCCCGcGCgCGguugCCGGc- -3' miRNA: 3'- -CUGCGGC-------AGACGGGC-CG-GCa---GGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 84115 | 0.72 | 0.207944 |
Target: 5'- -uCGCCGUCUGuUUCGaGUCGUUCGGGAg -3' miRNA: 3'- cuGCGGCAGAC-GGGC-CGGCAGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 101085 | 0.66 | 0.487284 |
Target: 5'- -cCGCCGUCgggaggGCCCGuCCGgCgCGGGGc -3' miRNA: 3'- cuGCGGCAGa-----CGGGCcGGCaG-GCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 97730 | 0.7 | 0.305575 |
Target: 5'- -uCGCCGgcgCcGCCCaGCCG-CCGGGGa -3' miRNA: 3'- cuGCGGCa--GaCGGGcCGGCaGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 132263 | 0.67 | 0.443263 |
Target: 5'- uGACGCCGauggccgugCUGCUgCGGUCGUCCGacgcgacgcuGGAg -3' miRNA: 3'- -CUGCGGCa--------GACGG-GCCGGCAGGC----------CCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 97596 | 0.66 | 0.493613 |
Target: 5'- gGACGCCGUgCUGaagucgcuggccauCgCCGGCaccuUCCGGGAc -3' miRNA: 3'- -CUGCGGCA-GAC--------------G-GGCCGgc--AGGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 38682 | 0.66 | 0.523933 |
Target: 5'- cGCGCUG-CUGCacCCGGCCGaccCCGGa- -3' miRNA: 3'- cUGCGGCaGACG--GGCCGGCa--GGCCcu -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 82378 | 0.69 | 0.333127 |
Target: 5'- cGGCGCCGaggGCCUcGUCGUCgGGGAg -3' miRNA: 3'- -CUGCGGCagaCGGGcCGGCAGgCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 90165 | 0.67 | 0.46061 |
Target: 5'- cGACGCCGacgCUGauCCCuGCCaggCCGGGGa -3' miRNA: 3'- -CUGCGGCa--GAC--GGGcCGGca-GGCCCU- -5' |
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25535 | 3' | -64.7 | NC_005337.1 | + | 68206 | 0.67 | 0.451891 |
Target: 5'- gGGCGCCGcugCggGCCCGccugacGgCGUCCGGGu -3' miRNA: 3'- -CUGCGGCa--Ga-CGGGC------CgGCAGGCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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