miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 18916 0.66 0.953117
Target:  5'- -gUCGCgGgcUUGAGCGCGUaCCcgaacagcaGGCGGGa -3'
miRNA:   3'- gaAGCGgU--AGCUUGCGUA-GG---------CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 114722 0.66 0.939474
Target:  5'- --gCGCCcugauuaaggaguGUCuGACGUuggacuUCCGGCAGGg -3'
miRNA:   3'- gaaGCGG-------------UAGcUUGCGu-----AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 72493 0.66 0.935081
Target:  5'- aCUUCGCCAaggUGAACGaGUUCGuGgAGGa -3'
miRNA:   3'- -GAAGCGGUa--GCUUGCgUAGGC-CgUCC- -5'
25536 3' -54.3 NC_005337.1 + 115892 0.66 0.944578
Target:  5'- --aUGUCGUCGAGCcccguCGUUCGGCAGcGg -3'
miRNA:   3'- gaaGCGGUAGCUUGc----GUAGGCCGUC-C- -5'
25536 3' -54.3 NC_005337.1 + 12930 0.66 0.953117
Target:  5'- -gUCGCCGcCGAACuccagGUA-CCGGCGGa -3'
miRNA:   3'- gaAGCGGUaGCUUG-----CGUaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 876 0.66 0.948966
Target:  5'- ---gGCCGggcggaaGAGCGCG-CCGaGCAGGa -3'
miRNA:   3'- gaagCGGUag-----CUUGCGUaGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 76244 0.66 0.944578
Target:  5'- --cCGCCGUCGAagaGCGCGgccuggCCGaGCAc- -3'
miRNA:   3'- gaaGCGGUAGCU---UGCGUa-----GGC-CGUcc -5'
25536 3' -54.3 NC_005337.1 + 2860 0.66 0.953117
Target:  5'- aCUUgGCCgAUCGGcgccucaccaGCGUggCCGGCGGc -3'
miRNA:   3'- -GAAgCGG-UAGCU----------UGCGuaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 12480 0.66 0.953117
Target:  5'- -aUCGCCGUCGAucUGCAUgucaUCGaGCAGc -3'
miRNA:   3'- gaAGCGGUAGCUu-GCGUA----GGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 97236 0.66 0.939474
Target:  5'- aCUUCGCCAacgacgaguucugUCGGGCGgugagCCGGCGc- -3'
miRNA:   3'- -GAAGCGGU-------------AGCUUGCgua--GGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 20103 0.66 0.933572
Target:  5'- --cCGCCAUCagcgaGAGCGCGUCCuccaccgagaggucGGCgaAGGc -3'
miRNA:   3'- gaaGCGGUAG-----CUUGCGUAGG--------------CCG--UCC- -5'
25536 3' -54.3 NC_005337.1 + 26990 0.66 0.953117
Target:  5'- ---gGUC-UCGGACcCGUCCGGCAGc -3'
miRNA:   3'- gaagCGGuAGCUUGcGUAGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 60852 0.66 0.941831
Target:  5'- -gUCGCuCAUgaucuccuggaacucCGAcGCGCGUCCGGCGu- -3'
miRNA:   3'- gaAGCG-GUA---------------GCU-UGCGUAGGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 54086 0.66 0.939951
Target:  5'- --gCGCCcgCGGcaggaGCGCGUCCGcGCGccGGc -3'
miRNA:   3'- gaaGCGGuaGCU-----UGCGUAGGC-CGU--CC- -5'
25536 3' -54.3 NC_005337.1 + 67472 0.66 0.953117
Target:  5'- --cCGCCgcuucGUCGAGgGCGUCucgCGGCuGGa -3'
miRNA:   3'- gaaGCGG-----UAGCUUgCGUAG---GCCGuCC- -5'
25536 3' -54.3 NC_005337.1 + 87228 0.66 0.93458
Target:  5'- aCUUCGCCAggaUGAuggagauGCGCuuGUCCGuggagaGCAGGa -3'
miRNA:   3'- -GAAGCGGUa--GCU-------UGCG--UAGGC------CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 94043 0.66 0.953117
Target:  5'- -cUUGUCGUCGAACGaCGagguUCCGGgaaCGGGc -3'
miRNA:   3'- gaAGCGGUAGCUUGC-GU----AGGCC---GUCC- -5'
25536 3' -54.3 NC_005337.1 + 93697 0.66 0.935081
Target:  5'- uCUUCGCCAgCGAGCG-GUCCauGG-AGGa -3'
miRNA:   3'- -GAAGCGGUaGCUUGCgUAGG--CCgUCC- -5'
25536 3' -54.3 NC_005337.1 + 15189 0.66 0.933572
Target:  5'- -gUCGCCGUCGAgggucAUGCAgUCCaGGCugcgacacaccgcgAGGa -3'
miRNA:   3'- gaAGCGGUAGCU-----UGCGU-AGG-CCG--------------UCC- -5'
25536 3' -54.3 NC_005337.1 + 47649 0.66 0.944578
Target:  5'- gUUCGCUGUgaCGAGCccggcgcccgGCAUgCUGGCGGGc -3'
miRNA:   3'- gAAGCGGUA--GCUUG----------CGUA-GGCCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.